Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBFCMMFG_22 | 15431 | 17350 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EBFCMMFG_22 | 15431 | 17350 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBFCMMFG_22 | 15434 | 17350 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EBFCMMFG_18 | 6330 | 6136 | CspA | 4.91e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EBFCMMFG_44 | 476 | 1337 | rep31 | 866 / 1155 | 88.22 | DQ489739 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EBFCMMFG_1 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_2 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_9 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_10 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_11 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_12 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_13 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_14 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_15 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_16 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_17 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_18 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_19 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_20 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_21 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_22 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_23 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_24 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_25 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_26 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_27 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_28 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_29 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_30 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_31 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_32 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_33 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_34 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_35 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_36 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_37 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_38 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_39 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_40 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_41 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_42 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_43 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_44 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_45 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_46 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_47 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_48 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_49 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_50 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_51 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_52 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_53 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_54 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_55 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_56 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_57 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_58 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_59 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_60 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_61 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_62 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_63 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_64 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_65 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_66 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_67 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_68 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_69 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_70 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_71 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_72 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_73 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_74 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_75 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_76 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_77 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_78 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_79 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_80 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_81 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_82 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_84 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_85 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_86 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_87 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_88 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_90 | 0.0 | 1.0 | 0.0 |
| EBFCMMFG_91 | 1.0 | 0.0 | 1.0 |
| EBFCMMFG_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EBFCMMFG_1 | 66629 | 86893 | False | Unknown | VOG5461, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG4763, VOG10609, VOG9091, VOG0648, VOG0753 |
| EBFCMMFG_10 | 45013 | 54533 | False | Siphoviridae | VOG4337, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556 |
| EBFCMMFG_73 | 35670 | 62428 | False | Siphoviridae | VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG9888, VOG0648, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)