Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCIJBIJP_1 | 117310 | 119235 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GCIJBIJP_83 | 196 | 690 | nimD | ARO:3007106 | nimD | 98.17 | 100.00 | X76949.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCIJBIJP_1 | 117310 | 119235 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GCIJBIJP_83 | 196 | 690 | nimD | Metronidazole | 98.59 | 100.00 | X76949 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCIJBIJP_1 | 117310 | 119232 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GCIJBIJP_83 | 199 | 690 | nimD | 5-nitroimidazole reductase NimD | BLASTX | 98.17 | 100.00 | WP_063854492.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCIJBIJP_1 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_2 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_3 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_4 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_5 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_6 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_7 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_8 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_9 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_10 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_11 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_12 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_13 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_14 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_15 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_16 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_17 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_18 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_19 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_20 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_21 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_22 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_23 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_24 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_25 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_26 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_27 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_28 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_29 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_30 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_31 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_32 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_33 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_34 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_35 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_36 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_37 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_38 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_39 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_40 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_41 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_42 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_43 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_44 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_45 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_46 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_47 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_48 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_49 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_50 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_51 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_52 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_53 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_54 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_55 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_56 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_57 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_58 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_59 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_60 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_61 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_62 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_63 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_64 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_65 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_66 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_67 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_68 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_69 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_70 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_71 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_72 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_73 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_74 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_75 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_77 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_78 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_79 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_80 | 1.0 | 0.0 | 1.0 |
| GCIJBIJP_81 | 0.0 | 1.0 | 0.0 |
| GCIJBIJP_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCIJBIJP_12 | 89546 | 98683 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)