Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OALFLPIN_67 | 108383 | 110308 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| OALFLPIN_78 | 55274 | 56137 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| OALFLPIN_78 | 53231 | 54031 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OALFLPIN_78 | 53231 | 54031 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| OALFLPIN_67 | 108383 | 110308 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OALFLPIN_78 | 55277 | 56137 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| OALFLPIN_78 | 53231 | 54028 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| OALFLPIN_67 | 108383 | 110305 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OALFLPIN_1 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_2 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_3 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_4 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_5 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_6 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_7 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_8 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_9 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_10 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_11 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_12 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_13 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_14 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_15 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_16 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_17 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_18 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_19 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_20 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_21 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_22 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_23 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_24 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_25 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_26 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_27 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_28 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_29 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_30 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_31 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_32 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_33 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_34 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_35 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_36 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_37 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_38 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_39 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_40 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_41 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_42 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_43 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_44 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_45 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_46 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_47 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_48 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_49 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_50 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_51 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_52 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_53 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_54 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_55 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_56 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_57 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_58 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_59 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_60 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_61 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_62 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_63 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_64 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_65 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_66 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_67 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_71 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_72 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_73 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_74 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_76 | 1.0 | 0.0 | 1.0 |
| OALFLPIN_78 | 0.0 | 1.0 | 0.0 |
| OALFLPIN_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OALFLPIN_26 | 49844 | 57557 | False | Siphoviridae | VOG3691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)