Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOGININI_19 | 3180 | 5117 | tet(M) | ARO:3000186 | tet(M) | 98.28 | 100.94 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IOGININI_19 | 3200 | 5117 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.37 | 99.58 | AM990992 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOGININI_19 | 3201 | 5117 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.06 | 99.69 | WP_000691736.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IOGININI_76 | 66295 | 67002 | WalR | 2.48e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| IOGININI_1 | 73957 | 74154 | CspR | 2.12e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| IOGININI_1 | 73957 | 74151 | CspA | 3.65e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IOGININI_19 | 13391 | 14596 | repUS43 | 1206 / 1206 | 100.00 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IOGININI_1 | 0.0 | 1.0 | 0.0 |
| IOGININI_2 | 0.0 | 1.0 | 0.0 |
| IOGININI_3 | 0.0 | 1.0 | 0.0 |
| IOGININI_4 | 0.0 | 1.0 | 0.0 |
| IOGININI_5 | 1.0 | 0.0 | 1.0 |
| IOGININI_6 | 0.0 | 1.0 | 0.0 |
| IOGININI_7 | 0.0 | 1.0 | 0.0 |
| IOGININI_8 | 1.0 | 0.0 | 1.0 |
| IOGININI_9 | 0.0 | 1.0 | 0.0 |
| IOGININI_10 | 0.0 | 1.0 | 0.0 |
| IOGININI_11 | 0.0 | 1.0 | 0.0 |
| IOGININI_12 | 0.0 | 1.0 | 0.0 |
| IOGININI_13 | 0.0 | 1.0 | 0.0 |
| IOGININI_14 | 0.0 | 1.0 | 0.0 |
| IOGININI_15 | 0.0 | 1.0 | 0.0 |
| IOGININI_16 | 0.0 | 1.0 | 0.0 |
| IOGININI_17 | 0.0 | 1.0 | 0.0 |
| IOGININI_18 | 0.0 | 1.0 | 0.0 |
| IOGININI_19 | 1.0 | 0.0 | 1.0 |
| IOGININI_20 | 0.0 | 1.0 | 0.0 |
| IOGININI_21 | 0.0 | 1.0 | 0.0 |
| IOGININI_22 | 0.0 | 1.0 | 0.0 |
| IOGININI_23 | 0.0 | 1.0 | 0.0 |
| IOGININI_24 | 0.0 | 1.0 | 0.0 |
| IOGININI_25 | 0.0 | 1.0 | 0.0 |
| IOGININI_26 | 0.0 | 1.0 | 0.0 |
| IOGININI_27 | 1.0 | 0.0 | 1.0 |
| IOGININI_28 | 0.0 | 1.0 | 0.0 |
| IOGININI_29 | 0.0 | 1.0 | 0.0 |
| IOGININI_30 | 0.0 | 1.0 | 0.0 |
| IOGININI_31 | 0.0 | 1.0 | 0.0 |
| IOGININI_32 | 1.0 | 0.0 | 1.0 |
| IOGININI_33 | 0.0 | 1.0 | 0.0 |
| IOGININI_34 | 0.0 | 1.0 | 0.0 |
| IOGININI_35 | 0.0 | 1.0 | 0.0 |
| IOGININI_36 | 1.0 | 0.0 | 1.0 |
| IOGININI_37 | 0.0 | 1.0 | 0.0 |
| IOGININI_38 | 1.0 | 0.0 | 1.0 |
| IOGININI_39 | 0.0 | 1.0 | 0.0 |
| IOGININI_40 | 1.0 | 0.0 | 1.0 |
| IOGININI_41 | 1.0 | 0.0 | 1.0 |
| IOGININI_43 | 1.0 | 0.0 | 1.0 |
| IOGININI_45 | 1.0 | 0.0 | 1.0 |
| IOGININI_46 | 1.0 | 0.0 | 1.0 |
| IOGININI_47 | 1.0 | 0.0 | 1.0 |
| IOGININI_51 | 1.0 | 0.0 | 1.0 |
| IOGININI_56 | 0.0 | 1.0 | 0.0 |
| IOGININI_67 | 1.0 | 0.0 | 1.0 |
| IOGININI_75 | 0.0 | 1.0 | 0.0 |
| IOGININI_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IOGININI_23 | 86113 | 119450 | False | Siphoviridae | VOG6495, VOG9667, VOG4552, VOG3478, VOG6357, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG6422, VOG1637, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG5904, VOG5008, VOG0641, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)