Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJDOEKFG_68 | 95201 | 95905 | WalR | 5.80e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JJDOEKFG_23 | 57522 | 57716 | CspR | 9.42e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JJDOEKFG_23 | 57522 | 57719 | CspA | 1.44e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JJDOEKFG_7 | 8698 | 9633 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JJDOEKFG_40 | 1024 | 1899 | rep38 | 876 / 903 | 99.54 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJDOEKFG_1 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_2 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_3 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_4 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_5 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_6 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_7 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_8 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_9 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_10 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_11 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_12 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_13 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_14 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_15 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_16 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_17 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_18 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_19 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_20 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_21 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_22 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_23 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_24 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_25 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_26 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_27 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_28 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_29 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_30 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_31 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_32 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_33 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_34 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_35 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_36 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_37 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_38 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_39 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_40 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_41 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_42 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_43 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_44 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_45 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_47 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_48 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_49 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_50 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_51 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_52 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_53 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_54 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_55 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_56 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_57 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_58 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_59 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_60 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_61 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_62 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_63 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_64 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_65 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_66 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_67 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_68 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_69 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_70 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_71 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_72 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_73 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_74 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_75 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_76 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_78 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_79 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_80 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_81 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_82 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_83 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_84 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_85 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_86 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_87 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_88 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_89 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_90 | 0.0 | 1.0 | 0.0 |
| JJDOEKFG_91 | 1.0 | 0.0 | 1.0 |
| JJDOEKFG_92 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJDOEKFG_2 | 3427 | 12210 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| JJDOEKFG_32 | 1360 | 10137 | False | Siphoviridae | VOG4556, VOG0202, VOG1886, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG3643, VOG0044, VOG0586, VOG4693 |
| JJDOEKFG_32 | 16282 | 39394 | False | Siphoviridae | VOG4552, VOG8520, VOG9267, VOG1561, VOG0275, VOG0054, VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207 |
Phigaro v2.4.0 (Database: Jan. 2024 release)