Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPDAPJGL_42 | 8332 | 7628 | WalR | 1.27e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KPDAPJGL_50 | 32378 | 32572 | CspR | 4.85e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KPDAPJGL_50 | 32378 | 32575 | CspA | 7.44e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KPDAPJGL_1 | 1022 | 1957 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPDAPJGL_1 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_2 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_3 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_4 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_5 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_6 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_7 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_8 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_9 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_10 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_11 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_12 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_13 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_14 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_16 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_17 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_19 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_20 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_22 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_23 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_24 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_25 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_26 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_27 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_29 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_30 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_32 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_33 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_34 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_36 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_38 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_39 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_40 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_41 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_42 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_43 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_44 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_45 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_46 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_47 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_48 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_49 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_50 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_51 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_52 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_53 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_54 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_55 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_56 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_57 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_58 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_59 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_60 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_66 | 0.0 | 1.0 | 0.0 |
| KPDAPJGL_67 | 1.0 | 0.0 | 1.0 |
| KPDAPJGL_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPDAPJGL_36 | 150646 | 179497 | False | Siphoviridae | VOG1637, VOG8294, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0638, VOG0143, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566 |
| KPDAPJGL_36 | 183058 | 199893 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| KPDAPJGL_53 | 2415 | 23462 | False | Siphoviridae | VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4686, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)