Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EMLHJMKF_20 | 95185 | 95889 | WalR | 5.81e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EMLHJMKF_1 | 216591 | 216785 | CspR | 1.64e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EMLHJMKF_1 | 216591 | 216788 | CspA | 2.52e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EMLHJMKF_17 | 3421 | 4356 | rep28 | 936 / 936 | 100.00 | CP005948 |
| EMLHJMKF_38 | 11708 | 12583 | rep38 | 876 / 903 | 99.54 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMLHJMKF_1 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_2 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_3 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_4 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_5 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_6 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_7 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_8 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_9 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_10 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_11 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_12 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_13 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_14 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_15 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_16 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_17 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_18 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_19 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_20 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_21 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_22 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_23 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_24 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_25 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_26 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_27 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_28 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_29 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_30 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_31 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_32 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_33 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_34 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_35 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_36 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_37 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_38 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_39 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_40 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_41 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_42 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_43 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_44 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_45 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_46 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_47 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_48 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_49 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_50 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_51 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_52 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_53 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_54 | 1.0 | 0.0 | 1.0 |
| EMLHJMKF_55 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_56 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_57 | 0.0 | 1.0 | 0.0 |
| EMLHJMKF_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMLHJMKF_14 | 5423 | 17874 | False | Siphoviridae | VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG1183, VOG3015 |
| EMLHJMKF_14 | 19216 | 42554 | False | Siphoviridae | VOG4693, VOG4552, VOG4566, VOG0186, VOG1309, VOG11016, VOG0181, VOG3172, VOG9667, VOG4602, VOG7508, VOG8491, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| EMLHJMKF_56 | 3774 | 30869 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG3643, VOG0044, VOG0586, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)