Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HGADDJJG_1 | 37771 | 38475 | WalR | 1.80e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HGADDJJG_3 | 2400 | 3329 | rep28 | 930 / 930 | 98.39 | CP003162 |
| HGADDJJG_4 | 3111 | 4020 | repUS64 | 911 / 954 | 92.86 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGADDJJG_1 | 0.0 | 1.0 | 0.0 |
| HGADDJJG_2 | 1.0 | 0.0 | 1.0 |
| HGADDJJG_3 | 1.0 | 0.0 | 1.0 |
| HGADDJJG_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGADDJJG_1 | 570804 | 604505 | False | Siphoviridae | VOG11003, VOG6495, VOG3549, VOG0650, VOG1309, VOG0186, VOG4855, VOG0189, VOG4693, VOG10015, VOG5883, VOG0044, VOG3643, VOG0198, VOG1714, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054 |
| HGADDJJG_1 | 1819947 | 1842409 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG4841 |
| HGADDJJG_1 | 2154965 | 2186668 | False | Siphoviridae | VOG8294, VOG6540, VOG10223, VOG10251, VOG4868, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699, VOG0638, VOG0788, VOG0198, VOG11003, VOG5039, VOG4693, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)