Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOBAKNHM_1 | 1951965 | 1953890 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.31 | AJ222769.3 |
| LOBAKNHM_1 | 674529 | 675905 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| LOBAKNHM_1 | 656146 | 656631 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| LOBAKNHM_1 | 653416 | 654153 | ErmT | ARO:3000595 | ErmT | 98.76 | 100.41 | M64090.1 |
| LOBAKNHM_1 | 498721 | 499365 | vatE | ARO:3002844 | vatE | 96.73 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LOBAKNHM_1 | 674529 | 675905 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 100.00 | AY081910 |
| LOBAKNHM_1 | 653426 | 654153 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 98.91 | AF310974 |
| LOBAKNHM_1 | 1951978 | 1953890 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 99.64 | FN396364 |
| LOBAKNHM_1 | 656146 | 656631 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
| LOBAKNHM_1 | 498721 | 499365 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.28 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOBAKNHM_1 | 656149 | 656631 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| LOBAKNHM_1 | 1951977 | 1953890 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_000691721.1 |
| LOBAKNHM_1 | 674532 | 675905 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| LOBAKNHM_1 | 498724 | 499365 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.07 | 100.00 | WP_063856929.1 |
| LOBAKNHM_1 | 653431 | 654153 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 98.76 | 98.77 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LOBAKNHM_1 | 1466489 | 1467643 | rep31 | 1160 / 1155 | 85.52 | DQ489739 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LOBAKNHM_1 | 0.0 | 1.0 | 0.0 |
| LOBAKNHM_2 | 1.0 | 0.0 | 1.0 |
| LOBAKNHM_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)