Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAJCGIJI_1 | 2518756 | 2519610 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| DAJCGIJI_1 | 2499457 | 2500659 | blt | ARO:3003006 | blt | 98.50 | 100.00 | L32599.1 |
| DAJCGIJI_1 | 2315368 | 2316537 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| DAJCGIJI_1 | 1344789 | 1345106 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| DAJCGIJI_1 | 1344451 | 1344789 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| DAJCGIJI_1 | 885896 | 888466 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| DAJCGIJI_1 | 588991 | 590619 | vmlR | ARO:3004476 | vmlR | 95.38 | 99.09 | NC_000964.3 |
| DAJCGIJI_1 | 330230 | 330823 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| DAJCGIJI_1 | 279665 | 281098 | lmrB | ARO:3002813 | lmrB | 99.79 | 100.00 | JYFL01000006.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DAJCGIJI_1 | 2518756 | 2519610 | aadK | Streptomycin | 98.25 | 100.00 | M26879 |
| DAJCGIJI_1 | 266844 | 267765 | mph(K) | Spiramycin, Telithromycin | 97.18 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAJCGIJI_1 | 2518759 | 2519610 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| DAJCGIJI_1 | 588997 | 590619 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 95.38 | 98.90 | WP_003234144.1 |
| DAJCGIJI_1 | 4037630 | 4038148 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
| DAJCGIJI_1 | 2023065 | 2025662 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.29 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DAJCGIJI_1 | 3537190 | 3538371 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| DAJCGIJI_1 | 3536726 | 3537175 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| DAJCGIJI_1 | 3535565 | 3536707 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| DAJCGIJI_1 | 3113059 | 3113844 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.98 | 100.00 | NP_391080 |
| DAJCGIJI_1 | 2115755 | 2116396 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.75 | 100.00 | NP_390062 |
| DAJCGIJI_1 | 3109223 | 3110161 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.72 | 100.00 | NP_391077 |
| DAJCGIJI_1 | 3111837 | 3113033 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.50 | 100.00 | NP_391079 |
| DAJCGIJI_1 | 3102073 | 3109203 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.32 | 99.99 | NP_391076 |
| DAJCGIJI_1 | 1978121 | 1979884 | dep/capD | 0.0 | Capsule | Immune modulation | 98.02 | 100.00 | NP_389723 |
| DAJCGIJI_1 | 3110189 | 3111808 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.59 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DAJCGIJI_1 | 132360 | 133496 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| DAJCGIJI_1 | 18648 | 19517 | pdxS | 3.02e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| DAJCGIJI_1 | 1654084 | 1654860 | CodY | 3.30e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DAJCGIJI_1 | 3380694 | 3381263 | ClpP | 2.45e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DAJCGIJI_3 | 132 | 319 | Col(SD853) | 188 / 194 | 93.62 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DAJCGIJI_1 | 0.0 | 1.0 | 0.0 |
| DAJCGIJI_2 | 1.0 | 0.0 | 1.0 |
| DAJCGIJI_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DAJCGIJI_1 | 1288481 | 1314617 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
| DAJCGIJI_1 | 2686933 | 2709717 | False | Myoviridae | VOG4707, VOG0641, VOG4705, VOG3390, VOG7718, VOG4845, VOG4691, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4623, VOG4564, VOG4553, VOG4555, VOG0720 |
| DAJCGIJI_1 | 2718289 | 2721441 | False | Myoviridae | VOG5263, VOG1309, VOG4600 |
Phigaro v2.4.0 (Database: Jan. 2024 release)