Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMGGBMMN_45 | 6175 | 8097 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| EMGGBMMN_36 | 3400 | 4044 | vatE | ARO:3002844 | vatE | 96.73 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EMGGBMMN_45 | 6175 | 8088 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| EMGGBMMN_36 | 3400 | 4044 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.28 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMGGBMMN_45 | 6175 | 8088 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| EMGGBMMN_36 | 3400 | 4041 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.07 | 100.00 | WP_063856929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMGGBMMN_1 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_2 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_3 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_4 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_5 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_6 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_7 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_8 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_9 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_10 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_11 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_12 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_13 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_14 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_15 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_16 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_17 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_18 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_19 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_20 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_21 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_22 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_23 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_24 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_25 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_26 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_27 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_28 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_29 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_30 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_31 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_32 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_33 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_34 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_35 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_36 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_37 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_38 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_39 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_40 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_41 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_42 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_43 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_44 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_45 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_46 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_48 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_49 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_50 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_51 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_52 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_53 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_54 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_55 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_56 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_57 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_58 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_59 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_60 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_61 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_62 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_63 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_64 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_65 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_66 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_67 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_68 | 1.0 | 0.0 | 1.0 |
| EMGGBMMN_70 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_71 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_72 | 0.0 | 1.0 | 0.0 |
| EMGGBMMN_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMGGBMMN_12 | 34242 | 58855 | False | Siphoviridae | VOG4705, VOG5008, VOG4619, VOG0801, VOG5904, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG10227, VOG0198 |
| EMGGBMMN_21 | 12730 | 22561 | False | Myoviridae | VOG0384, VOG0382, VOG0348, VOG5235, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)