Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MHDCJKPH_29 | 61804 | 62298 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
| MHDCJKPH_38 | 23363 | 25285 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
| MHDCJKPH_11 | 7850 | 8335 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| MHDCJKPH_11 | 5118 | 5855 | ErmT | ARO:3000595 | ErmT | 98.76 | 100.41 | M64090.1 |
| MHDCJKPH_62 | 2123 | 2767 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MHDCJKPH_11 | 5128 | 5855 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 98.91 | AF310974 |
| MHDCJKPH_29 | 61804 | 62298 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| MHDCJKPH_38 | 23372 | 25285 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| MHDCJKPH_11 | 7850 | 8335 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
| MHDCJKPH_62 | 2123 | 2767 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MHDCJKPH_62 | 2123 | 2764 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| MHDCJKPH_11 | 7853 | 8335 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| MHDCJKPH_38 | 23372 | 25285 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| MHDCJKPH_11 | 5133 | 5855 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 98.76 | 98.77 | WP_002345002.1 |
| MHDCJKPH_29 | 61807 | 62298 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHDCJKPH_1 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_2 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_3 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_4 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_5 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_6 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_8 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_9 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_10 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_11 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_12 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_13 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_14 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_15 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_17 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_18 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_19 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_20 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_21 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_22 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_24 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_25 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_26 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_27 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_28 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_29 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_30 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_31 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_32 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_33 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_34 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_35 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_36 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_37 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_38 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_39 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_40 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_41 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_42 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_43 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_44 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_45 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_46 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_47 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_48 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_49 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_50 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_51 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_52 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_53 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_54 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_55 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_56 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_57 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_58 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_59 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_60 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_61 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_62 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_63 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_64 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_65 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_66 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_67 | 1.0 | 0.0 | 1.0 |
| MHDCJKPH_68 | 0.0 | 1.0 | 0.0 |
| MHDCJKPH_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHDCJKPH_34 | 2247 | 26426 | False | Myoviridae | VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4760, VOG5068, VOG0083, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG6132, VOG1915, VOG4918, VOG5027, VOG1912, VOG7407, VOG0796, VOG1345 |
| MHDCJKPH_68 | 1671 | 29598 | False | Myoviridae | VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG5793, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG0686, VOG4564, VOG0720, VOG10227, VOG3699, VOG0198, VOG6005, VOG0327, VOG10904, VOG6330, VOG4966, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548 |
| MHDCJKPH_68 | 30441 | 33450 | False | Unknown | VOG0321, VOG2228, VOG2124, VOG8520, VOG0862, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)