Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KAOCHMBE_20 | 6175 | 8097 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| KAOCHMBE_46 | 3400 | 4044 | vatE | ARO:3002844 | vatE | 96.73 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KAOCHMBE_20 | 6175 | 8088 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| KAOCHMBE_46 | 3400 | 4044 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.28 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KAOCHMBE_20 | 6175 | 8088 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| KAOCHMBE_46 | 3400 | 4041 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.07 | 100.00 | WP_063856929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KAOCHMBE_1 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_2 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_3 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_4 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_5 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_6 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_7 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_8 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_9 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_11 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_12 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_13 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_14 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_15 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_16 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_17 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_18 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_19 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_20 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_21 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_22 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_23 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_24 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_25 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_26 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_27 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_28 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_29 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_30 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_31 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_32 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_33 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_34 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_35 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_36 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_37 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_38 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_39 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_40 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_41 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_42 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_43 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_44 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_45 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_46 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_47 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_48 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_49 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_50 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_51 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_52 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_53 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_54 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_55 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_56 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_57 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_58 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_59 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_60 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_61 | 1.0 | 0.0 | 1.0 |
| KAOCHMBE_62 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_63 | 0.0 | 1.0 | 0.0 |
| KAOCHMBE_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KAOCHMBE_22 | 17540 | 27371 | False | Myoviridae | VOG0189, VOG5235, VOG0348, VOG0382, VOG0384 |
| KAOCHMBE_31 | 11725 | 36338 | False | Siphoviridae | VOG0083, VOG0198, VOG10227, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5904, VOG0801, VOG4619, VOG5008 |
Phigaro v2.4.0 (Database: Jan. 2024 release)