Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IAHGHAIE_34 | 33969 | 35891 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| IAHGHAIE_39 | 3400 | 4044 | vatE | ARO:3002844 | vatE | 96.73 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IAHGHAIE_34 | 33978 | 35891 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| IAHGHAIE_39 | 3400 | 4044 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.28 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IAHGHAIE_34 | 33978 | 35891 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| IAHGHAIE_39 | 3400 | 4041 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.07 | 100.00 | WP_063856929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IAHGHAIE_1 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_2 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_3 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_4 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_5 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_6 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_7 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_8 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_9 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_10 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_11 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_12 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_13 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_14 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_15 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_17 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_18 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_19 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_20 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_21 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_22 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_23 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_24 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_25 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_26 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_27 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_28 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_29 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_30 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_31 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_32 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_33 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_34 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_35 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_36 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_37 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_38 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_39 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_40 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_41 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_42 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_43 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_44 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_45 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_46 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_47 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_48 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_49 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_50 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_51 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_52 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_53 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_54 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_55 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_56 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_57 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_58 | 1.0 | 0.0 | 1.0 |
| IAHGHAIE_59 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_60 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_61 | 0.0 | 1.0 | 0.0 |
| IAHGHAIE_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IAHGHAIE_59 | 11822 | 22485 | False | Myoviridae | VOG2880, VOG0226, VOG0384, VOG0382, VOG0348, VOG5235, VOG0189 |
| IAHGHAIE_62 | 34242 | 58855 | False | Siphoviridae | VOG4705, VOG5008, VOG4619, VOG0801, VOG5904, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG10227, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)