Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKMOCCCJ_32 | 110452 | 112374 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
| LKMOCCCJ_20 | 37715 | 38452 | ErmT | ARO:3000595 | ErmT | 98.76 | 100.41 | M64090.1 |
| LKMOCCCJ_20 | 35235 | 35720 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LKMOCCCJ_20 | 37715 | 38442 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 98.91 | AF310974 |
| LKMOCCCJ_32 | 110461 | 112374 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| LKMOCCCJ_20 | 35235 | 35720 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKMOCCCJ_20 | 35235 | 35717 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| LKMOCCCJ_32 | 110461 | 112374 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| LKMOCCCJ_20 | 37715 | 38437 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 98.76 | 98.77 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKMOCCCJ_1 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_2 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_3 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_4 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_5 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_6 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_7 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_9 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_10 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_11 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_12 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_13 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_14 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_15 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_16 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_17 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_18 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_19 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_20 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_21 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_22 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_23 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_24 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_25 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_26 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_27 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_28 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_29 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_30 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_31 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_32 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_33 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_34 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_35 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_36 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_37 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_38 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_39 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_40 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_41 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_42 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_43 | 1.0 | 0.0 | 1.0 |
| LKMOCCCJ_44 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_46 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_47 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_48 | 0.0 | 1.0 | 0.0 |
| LKMOCCCJ_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)