Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGKNBFMK_38 | 32503 | 32997 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
| KGKNBFMK_45 | 2598 | 3242 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
| KGKNBFMK_54 | 1044 | 2966 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGKNBFMK_38 | 32503 | 32997 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| KGKNBFMK_54 | 1053 | 2966 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| KGKNBFMK_45 | 2598 | 3242 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGKNBFMK_45 | 2601 | 3242 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| KGKNBFMK_54 | 1053 | 2966 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
| KGKNBFMK_38 | 32506 | 32997 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGKNBFMK_1 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_2 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_3 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_4 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_5 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_6 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_7 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_8 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_9 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_10 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_11 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_12 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_13 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_14 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_15 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_16 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_17 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_18 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_19 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_20 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_21 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_22 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_23 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_24 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_25 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_26 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_27 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_28 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_29 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_30 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_31 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_32 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_33 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_34 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_35 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_36 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_37 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_38 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_39 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_40 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_41 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_42 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_43 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_45 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_46 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_47 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_48 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_49 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_50 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_51 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_52 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_53 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_54 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_55 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_56 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_57 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_58 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_59 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_60 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_61 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_62 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_63 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_64 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_65 | 1.0 | 0.0 | 1.0 |
| KGKNBFMK_66 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_67 | 0.0 | 1.0 | 0.0 |
| KGKNBFMK_68 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)