Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFEBMMIJ_49 | 183145 | 183879 | ErmT | ARO:3000595 | ErmT | 99.18 | 100.00 | M64090.1 |
| FFEBMMIJ_49 | 180665 | 181150 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| FFEBMMIJ_45 | 6189 | 8111 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFEBMMIJ_49 | 183145 | 183879 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | AF310974 |
| FFEBMMIJ_45 | 6189 | 8102 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| FFEBMMIJ_49 | 180665 | 181150 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFEBMMIJ_49 | 180665 | 181147 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| FFEBMMIJ_45 | 6189 | 8102 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| FFEBMMIJ_49 | 183145 | 183876 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 99.18 | 100.00 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FFEBMMIJ_1 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_2 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_3 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_4 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_5 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_6 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_7 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_8 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_9 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_10 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_11 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_12 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_13 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_14 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_15 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_16 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_18 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_19 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_20 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_21 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_22 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_23 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_24 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_25 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_26 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_27 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_28 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_29 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_30 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_31 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_32 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_33 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_34 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_35 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_36 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_37 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_38 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_39 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_40 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_41 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_43 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_44 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_45 | 1.0 | 0.0 | 1.0 |
| FFEBMMIJ_46 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_47 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_48 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_49 | 0.0 | 1.0 | 0.0 |
| FFEBMMIJ_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)