Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKAGKGJB_28 | 23398 | 25320 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
| IKAGKGJB_34 | 3542 | 4276 | ErmT | ARO:3000595 | ErmT | 99.18 | 100.00 | M64090.1 |
| IKAGKGJB_10 | 847 | 1332 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IKAGKGJB_34 | 3542 | 4276 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | AF310974 |
| IKAGKGJB_28 | 23407 | 25320 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| IKAGKGJB_10 | 847 | 1332 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKAGKGJB_10 | 850 | 1332 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| IKAGKGJB_28 | 23407 | 25320 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| IKAGKGJB_34 | 3545 | 4276 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 99.18 | 100.00 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IKAGKGJB_1 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_2 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_3 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_4 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_5 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_6 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_7 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_8 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_9 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_10 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_11 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_12 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_13 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_14 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_15 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_16 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_17 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_18 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_19 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_20 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_21 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_22 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_23 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_24 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_25 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_27 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_28 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_29 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_30 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_31 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_32 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_33 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_34 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_35 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_36 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_37 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_38 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_39 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_40 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_41 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_42 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_43 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_44 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_45 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_46 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_47 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_48 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_49 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_50 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_51 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_52 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_53 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_54 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_55 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_56 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_57 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_58 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_59 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_60 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_61 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_62 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_63 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_64 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_66 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_67 | 1.0 | 0.0 | 1.0 |
| IKAGKGJB_68 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_69 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_70 | 0.0 | 1.0 | 0.0 |
| IKAGKGJB_71 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IKAGKGJB_60 | 6320 | 13160 | False | Siphoviridae | VOG5332, VOG0275, VOG3304, VOG0862, VOG6495, VOG4603, VOG7236, VOG11040, VOG9667 |
| IKAGKGJB_60 | 20769 | 52908 | False | Myoviridae | VOG0327, VOG9667, VOG8232, VOG0198, VOG0195, VOG0686, VOG3699, VOG7407, VOG1912, VOG4564, VOG4824, VOG1915, VOG6132, VOG1942, VOG4710, VOG1353, VOG1883, VOG1352, VOG4699, VOG5904, VOG4918, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4620, VOG7454, VOG10969 |
Phigaro v2.4.0 (Database: Jan. 2024 release)