Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMMJMDMH_13 | 37845 | 38582 | ErmT | ARO:3000595 | ErmT | 98.76 | 100.41 | M64090.1 |
| OMMJMDMH_13 | 35365 | 35850 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| OMMJMDMH_7 | 16036 | 17958 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| OMMJMDMH_43 | 2124 | 2768 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMMJMDMH_13 | 37845 | 38572 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 98.91 | AF310974 |
| OMMJMDMH_7 | 16036 | 17949 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 99.69 | FN396364 |
| OMMJMDMH_13 | 35365 | 35850 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
| OMMJMDMH_43 | 2124 | 2768 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMMJMDMH_43 | 2124 | 2765 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| OMMJMDMH_7 | 16036 | 17949 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
| OMMJMDMH_13 | 35365 | 35847 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| OMMJMDMH_13 | 37845 | 38567 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 98.76 | 98.77 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMMJMDMH_1 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_2 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_3 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_4 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_5 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_6 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_7 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_8 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_9 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_10 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_11 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_12 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_13 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_14 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_15 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_16 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_17 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_18 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_19 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_20 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_21 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_22 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_23 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_24 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_25 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_26 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_27 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_28 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_29 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_31 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_32 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_33 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_34 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_35 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_36 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_37 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_38 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_39 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_40 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_41 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_42 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_43 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_44 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_45 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_46 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_47 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_48 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_49 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_50 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_51 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_52 | 0.0 | 1.0 | 0.0 |
| OMMJMDMH_53 | 1.0 | 0.0 | 1.0 |
| OMMJMDMH_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)