Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCBEPFIF_59 | 23246 | 25168 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
| PCBEPFIF_56 | 3493 | 4137 | ErmT | ARO:3000595 | ErmT | 98.57 | 87.70 | M64090.1 |
| PCBEPFIF_9 | 2123 | 2767 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
| PCBEPFIF_26 | 2009 | 2494 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCBEPFIF_56 | 3503 | 4138 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.37 | 86.39 | AF310974 |
| PCBEPFIF_59 | 23255 | 25168 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| PCBEPFIF_26 | 2009 | 2494 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
| PCBEPFIF_9 | 2123 | 2767 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCBEPFIF_9 | 2123 | 2764 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| PCBEPFIF_26 | 2012 | 2494 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| PCBEPFIF_59 | 23255 | 25168 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| PCBEPFIF_56 | 3508 | 4137 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | PARTIAL_CONTIG_ENDX | 98.57 | 86.07 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCBEPFIF_1 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_2 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_3 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_4 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_5 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_6 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_7 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_8 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_9 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_10 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_11 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_12 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_13 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_15 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_16 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_17 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_18 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_19 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_20 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_21 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_22 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_23 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_24 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_25 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_26 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_27 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_28 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_29 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_30 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_31 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_32 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_33 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_34 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_35 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_37 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_38 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_39 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_40 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_41 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_42 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_43 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_44 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_45 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_46 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_47 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_48 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_49 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_50 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_51 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_52 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_53 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_54 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_55 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_56 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_57 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_58 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_59 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_61 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_62 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_63 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_64 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_65 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_66 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_67 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_68 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_69 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_70 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_71 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_72 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_73 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_74 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_75 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_76 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_77 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_78 | 0.0 | 1.0 | 0.0 |
| PCBEPFIF_79 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_80 | 1.0 | 0.0 | 1.0 |
| PCBEPFIF_81 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCBEPFIF_1 | 91320 | 97416 | False | Myoviridae | VOG0348, VOG0382, VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)