Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCJMPBHN_20 | 66271 | 66756 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| NCJMPBHN_20 | 63542 | 64276 | ErmT | ARO:3000595 | ErmT | 99.18 | 100.00 | M64090.1 |
| NCJMPBHN_22 | 23792 | 25714 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| NCJMPBHN_64 | 467 | 1111 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCJMPBHN_20 | 63542 | 64276 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | AF310974 |
| NCJMPBHN_22 | 23801 | 25714 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| NCJMPBHN_20 | 66271 | 66756 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
| NCJMPBHN_64 | 467 | 1111 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCJMPBHN_64 | 470 | 1111 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| NCJMPBHN_22 | 23801 | 25714 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
| NCJMPBHN_20 | 66274 | 66756 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| NCJMPBHN_20 | 63545 | 64276 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 99.18 | 100.00 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCJMPBHN_1 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_2 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_3 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_4 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_5 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_6 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_7 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_8 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_9 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_11 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_12 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_13 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_14 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_15 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_16 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_17 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_18 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_19 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_20 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_21 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_22 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_23 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_25 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_26 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_27 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_28 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_29 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_30 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_31 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_32 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_33 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_34 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_35 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_36 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_37 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_38 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_39 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_40 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_41 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_42 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_43 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_44 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_45 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_46 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_47 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_48 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_49 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_50 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_51 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_52 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_53 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_54 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_55 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_56 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_57 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_58 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_59 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_60 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_61 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_62 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_63 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_64 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_65 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_66 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_67 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_68 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_69 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_70 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_71 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_73 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_74 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_75 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_76 | 1.0 | 0.0 | 1.0 |
| NCJMPBHN_77 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_78 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_79 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_80 | 0.0 | 1.0 | 0.0 |
| NCJMPBHN_81 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCJMPBHN_18 | 34440 | 40536 | False | Myoviridae | VOG0348, VOG0382, VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)