Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEEMJGFE_12 | 71958 | 72443 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| CEEMJGFE_12 | 69229 | 69963 | ErmT | ARO:3000595 | ErmT | 99.18 | 100.00 | M64090.1 |
| CEEMJGFE_37 | 24883 | 26805 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CEEMJGFE_12 | 69229 | 69963 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | AF310974 |
| CEEMJGFE_37 | 24892 | 26805 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| CEEMJGFE_12 | 71958 | 72443 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEEMJGFE_37 | 24892 | 26805 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
| CEEMJGFE_12 | 71961 | 72443 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| CEEMJGFE_12 | 69232 | 69963 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 99.18 | 100.00 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEEMJGFE_1 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_2 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_3 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_4 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_5 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_6 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_7 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_8 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_9 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_10 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_11 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_12 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_14 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_15 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_16 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_17 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_18 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_19 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_20 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_21 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_22 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_23 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_24 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_25 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_26 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_27 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_28 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_29 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_30 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_31 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_32 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_33 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_34 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_35 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_36 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_37 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_39 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_40 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_41 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_42 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_43 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_44 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_45 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_46 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_47 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_48 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_49 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_50 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_51 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_52 | 1.0 | 0.0 | 1.0 |
| CEEMJGFE_55 | 0.0 | 1.0 | 0.0 |
| CEEMJGFE_56 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEEMJGFE_15 | 1964 | 28257 | False | Myoviridae | VOG7407, VOG1912, VOG4564, VOG4824, VOG1915, VOG6132, VOG1942, VOG4710, VOG1353, VOG1883, VOG1352, VOG4699, VOG5904, VOG4918, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4620, VOG7454, VOG5763 |
| CEEMJGFE_55 | 22660 | 49793 | False | Myoviridae | VOG4705, VOG9945, VOG0979, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG2115, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG5027, VOG1912 |
Phigaro v2.4.0 (Database: Jan. 2024 release)