Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FIEJEEAG_16 | 36003 | 37925 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| FIEJEEAG_36 | 30570 | 31307 | ErmT | ARO:3000595 | ErmT | 98.76 | 100.41 | M64090.1 |
| FIEJEEAG_36 | 28090 | 28575 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| FIEJEEAG_73 | 1572 | 2216 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FIEJEEAG_36 | 30570 | 31297 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 98.91 | AF310974 |
| FIEJEEAG_16 | 36003 | 37916 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| FIEJEEAG_36 | 28090 | 28575 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
| FIEJEEAG_73 | 1572 | 2216 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FIEJEEAG_73 | 1572 | 2213 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| FIEJEEAG_16 | 36003 | 37916 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
| FIEJEEAG_36 | 28090 | 28572 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| FIEJEEAG_36 | 30570 | 31292 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 98.76 | 98.77 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIEJEEAG_1 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_2 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_3 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_4 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_5 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_6 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_7 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_8 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_9 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_10 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_11 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_12 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_13 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_14 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_15 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_16 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_17 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_18 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_19 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_20 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_21 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_22 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_23 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_24 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_25 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_26 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_27 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_28 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_29 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_30 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_31 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_32 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_33 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_34 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_35 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_36 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_37 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_38 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_39 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_41 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_42 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_43 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_44 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_45 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_46 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_47 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_48 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_49 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_50 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_51 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_52 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_53 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_54 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_55 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_56 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_57 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_58 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_59 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_60 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_61 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_62 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_63 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_64 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_65 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_66 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_67 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_68 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_69 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_70 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_71 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_72 | 0.0 | 1.0 | 0.0 |
| FIEJEEAG_73 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_74 | 1.0 | 0.0 | 1.0 |
| FIEJEEAG_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIEJEEAG_8 | 113271 | 120199 | False | Myoviridae | VOG0348, VOG0382, VOG0384, VOG0226 |
Phigaro v2.4.0 (Database: Jan. 2024 release)