Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHAFHHDF_2 | 83998 | 84642 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
| LHAFHHDF_17 | 38196 | 40118 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LHAFHHDF_17 | 38196 | 40109 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| LHAFHHDF_2 | 83998 | 84642 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHAFHHDF_2 | 83998 | 84639 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| LHAFHHDF_17 | 38196 | 40109 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.22 | 99.84 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHAFHHDF_1 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_2 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_3 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_4 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_5 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_6 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_7 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_8 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_10 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_12 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_13 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_14 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_15 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_16 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_17 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_18 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_19 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_20 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_21 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_22 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_23 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_24 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_25 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_26 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_27 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_28 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_29 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_30 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_31 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_32 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_33 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_34 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_35 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_36 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_37 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_38 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_39 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_40 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_41 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_42 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_43 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_44 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_45 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_46 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_47 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_48 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_49 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_50 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_51 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_52 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_53 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_54 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_55 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_56 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_57 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_58 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_59 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_60 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_61 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_62 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_63 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_64 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_65 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_66 | 1.0 | 0.0 | 1.0 |
| LHAFHHDF_67 | 0.0 | 1.0 | 0.0 |
| LHAFHHDF_68 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)