Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGAFHEEG_3 | 38307 | 40229 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
| LGAFHEEG_4 | 111 | 755 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGAFHEEG_3 | 38307 | 40220 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.69 | FN396364 |
| LGAFHEEG_4 | 111 | 755 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGAFHEEG_4 | 114 | 755 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| LGAFHEEG_3 | 38307 | 40220 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.22 | 99.84 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGAFHEEG_1 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_2 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_3 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_4 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_5 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_6 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_7 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_8 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_9 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_10 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_11 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_12 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_13 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_14 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_15 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_16 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_17 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_18 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_19 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_20 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_21 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_22 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_23 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_24 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_25 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_26 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_27 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_28 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_29 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_30 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_31 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_32 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_33 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_34 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_35 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_36 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_37 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_38 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_39 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_40 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_42 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_43 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_44 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_45 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_46 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_47 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_48 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_49 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_50 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_51 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_53 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_54 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_55 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_56 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_57 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_58 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_59 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_60 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_61 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_62 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_63 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_64 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_65 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_66 | 1.0 | 0.0 | 1.0 |
| LGAFHEEG_68 | 0.0 | 1.0 | 0.0 |
| LGAFHEEG_69 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)