Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHFHMHFB_13 | 112802 | 113506 | WalR | 1.61e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CHFHMHFB_2 | 338118 | 338312 | CspR | 2.13e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CHFHMHFB_2 | 338118 | 338315 | CspA | 3.26e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHFHMHFB_33 | 648 | 1583 | rep28 | 936 / 936 | 98.08 | CP005948 |
| CHFHMHFB_19 | 3114 | 4153 | rep38 | 1042 / 1104 | 89.06 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHFHMHFB_1 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_2 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_3 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_4 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_5 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_6 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_7 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_8 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_9 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_10 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_11 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_12 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_13 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_14 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_15 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_16 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_17 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_18 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_19 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_20 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_21 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_22 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_23 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_24 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_25 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_26 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_27 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_28 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_29 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_30 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_31 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_32 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_33 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_34 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_35 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_36 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_37 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_39 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_40 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_41 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_42 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_43 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_44 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_45 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_46 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_47 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_48 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_49 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_50 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_51 | 1.0 | 0.0 | 1.0 |
| CHFHMHFB_57 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_64 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_65 | 0.0 | 1.0 | 0.0 |
| CHFHMHFB_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHFHMHFB_1 | 51087 | 81010 | False | Siphoviridae | VOG6140, VOG6970, VOG0044, VOG4010, VOG0198, VOG7481, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4615, VOG0753, VOG0054, VOG1521 |
| CHFHMHFB_24 | 269095 | 280146 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204 |
| CHFHMHFB_35 | 149665 | 182533 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG9997, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG9667, VOG0198, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)