Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDOJNNJC_57 | 67441 | 67247 | CspA | 1.74e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDOJNNJC_10 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_11 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_12 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_13 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_14 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_15 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_16 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_17 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_18 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_19 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_21 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_22 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_23 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_24 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_25 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_26 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_27 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_28 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_29 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_30 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_32 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_33 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_34 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_35 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_36 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_37 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_38 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_39 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_40 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_41 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_43 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_44 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_45 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_46 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_47 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_48 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_49 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_50 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_51 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_52 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_54 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_55 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_57 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_58 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_59 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_60 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_61 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_62 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_63 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_65 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_66 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_67 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_68 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_69 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_70 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_71 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_72 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_73 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_74 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_76 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_77 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_78 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_79 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_80 | 1.0 | 0.0 | 1.0 |
| DDOJNNJC_81 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_93 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_97 | 0.0 | 1.0 | 0.0 |
| DDOJNNJC_105 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDOJNNJC_15 | 3619 | 12918 | False | Unknown | VOG0186, VOG1309, VOG11003, VOG11003, VOG6450, VOG0979, VOG4552, VOG0052, VOG8520, VOG0862, VOG3304, VOG6421 |
| DDOJNNJC_15 | 19226 | 45068 | False | Siphoviridae | VOG7454, VOG8294, VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| DDOJNNJC_18 | 30055 | 36507 | False | Siphoviridae | VOG4602, VOG8520, VOG8520, VOG0707, VOG3478, VOG0321, VOG4548, VOG0322 |
| DDOJNNJC_19 | 4029 | 32548 | False | Siphoviridae | VOG5008, VOG4887, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG0630, VOG5967, VOG0198, VOG0686, VOG5317, VOG5280 |
| DDOJNNJC_24 | 3769 | 25127 | False | Siphoviridae | VOG10227, VOG0720, VOG4564, VOG0638, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG5070, VOG0641, VOG0703 |
| DDOJNNJC_45 | 40577 | 54665 | False | Siphoviridae | VOG3490, VOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG0542 |
| DDOJNNJC_105 | 54997 | 77374 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886 |
Phigaro v2.4.0 (Database: Jan. 2024 release)