Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFEMFFEL_18 | 71601 | 71795 | CspA | 1.12e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFEMFFEL_2 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_3 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_4 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_5 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_6 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_7 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_8 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_9 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_10 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_11 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_15 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_18 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_29 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_39 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_44 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_46 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_47 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_48 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_49 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_50 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_51 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_52 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_53 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_54 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_55 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_57 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_58 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_59 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_60 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_61 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_62 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_63 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_64 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_65 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_66 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_68 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_69 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_70 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_71 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_72 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_73 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_74 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_75 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_76 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_77 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_79 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_80 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_81 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_82 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_83 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_84 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_85 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_86 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_87 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_88 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_90 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_91 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_92 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_93 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_94 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_95 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_96 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_97 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_98 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_99 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_101 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_102 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_103 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_104 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_105 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_107 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_108 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_109 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_110 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_112 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_114 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_115 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_116 | 1.0 | 0.0 | 1.0 |
| GFEMFFEL_117 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_118 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_119 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_120 | 0.0 | 1.0 | 0.0 |
| GFEMFFEL_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFEMFFEL_77 | 40124 | 66646 | False | Myoviridae | VOG3307, VOG9671, VOG4693, VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10527, VOG7533, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6298 |
| GFEMFFEL_114 | 13257 | 36537 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| GFEMFFEL_114 | 42424 | 56591 | False | Siphoviridae | VOG4799, VOG0186, VOG1309, VOG11003, VOG3478, VOG0707, VOG4552, VOG9469, VOG5883, VOG4586, VOG8520, VOG8520, VOG4602, VOG4662, VOG0774, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)