Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FCECBHOL_62 | 67441 | 67247 | CspA | 1.71e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCECBHOL_8 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_20 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_26 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_29 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_30 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_31 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_32 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_33 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_34 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_35 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_36 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_37 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_38 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_40 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_41 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_42 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_43 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_44 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_45 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_46 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_47 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_48 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_49 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_51 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_52 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_53 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_54 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_55 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_56 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_57 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_58 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_59 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_60 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_62 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_63 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_64 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_65 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_66 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_67 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_68 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_69 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_70 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_71 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_73 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_74 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_75 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_76 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_77 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_78 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_79 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_80 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_81 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_82 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_84 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_85 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_86 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_87 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_88 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_89 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_90 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_91 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_92 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_93 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_95 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_96 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_97 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_98 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_99 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_100 | 1.0 | 0.0 | 1.0 |
| FCECBHOL_105 | 0.0 | 1.0 | 0.0 |
| FCECBHOL_110 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCECBHOL_33 | 30055 | 36507 | False | Siphoviridae | VOG4602, VOG8520, VOG8520, VOG0707, VOG3478, VOG0321, VOG4548, VOG0322 |
| FCECBHOL_34 | 6539 | 35059 | False | Siphoviridae | VOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG5967, VOG0630, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG5008 |
| FCECBHOL_35 | 1535 | 23917 | False | Siphoviridae | VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| FCECBHOL_40 | 6834 | 28192 | False | Siphoviridae | VOG0703, VOG0641, VOG5070, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720 |
| FCECBHOL_49 | 40580 | 54668 | False | Siphoviridae | VOG3490, VOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG0542 |
| FCECBHOL_86 | 65473 | 88470 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)