Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHLJJHIA_8 | 72083 | 72277 | CspA | 1.13e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHLJJHIA_3 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_4 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_5 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_6 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_7 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_8 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_9 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_11 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_12 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_13 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_14 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_15 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_16 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_20 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_32 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_44 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_54 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_65 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_75 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_76 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_77 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_78 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_79 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_80 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_81 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_83 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_84 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_85 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_86 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_87 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_88 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_89 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_90 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_91 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_92 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_94 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_95 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_96 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_97 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_98 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_99 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_100 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_101 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_102 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_103 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_105 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_106 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_107 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_108 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_109 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_110 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_111 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_112 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_113 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_114 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_116 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_117 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_118 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_119 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_120 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_121 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_122 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_123 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_125 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_127 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_128 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_129 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_130 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_131 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_132 | 1.0 | 0.0 | 1.0 |
| NHLJJHIA_133 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_135 | 0.0 | 1.0 | 0.0 |
| NHLJJHIA_136 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NHLJJHIA_107 | 54575 | 77855 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| NHLJJHIA_107 | 83742 | 97909 | False | Siphoviridae | VOG4799, VOG0186, VOG1309, VOG11003, VOG3478, VOG0707, VOG4552, VOG9469, VOG5883, VOG4586, VOG8520, VOG8520, VOG4602, VOG4662, VOG0774, VOG0275 |
| NHLJJHIA_119 | 40072 | 66594 | False | Myoviridae | VOG3307, VOG9671, VOG4693, VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10527, VOG7533, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6298 |
Phigaro v2.4.0 (Database: Jan. 2024 release)