Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DFJMGIHN_31 | 53235 | 53429 | CspA | 1.07e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DFJMGIHN_3 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_4 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_5 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_6 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_7 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_8 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_9 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_10 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_11 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_13 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_14 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_15 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_16 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_17 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_18 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_19 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_20 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_21 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_22 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_23 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_25 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_26 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_27 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_28 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_29 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_30 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_31 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_32 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_33 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_36 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_37 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_38 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_39 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_40 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_41 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_42 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_43 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_44 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_45 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_47 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_48 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_49 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_55 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_64 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_76 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_87 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_98 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_99 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_100 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_101 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_102 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_103 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_105 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_106 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_107 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_108 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_109 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_110 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_111 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_112 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_113 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_114 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_116 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_117 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_118 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_119 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_120 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_121 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_122 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_123 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_124 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_125 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_127 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_128 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_129 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_130 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_131 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_132 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_133 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_134 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_135 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_136 | 1.0 | 0.0 | 1.0 |
| DFJMGIHN_138 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_139 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_140 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_141 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_142 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_143 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_144 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_145 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_146 | 0.0 | 1.0 | 0.0 |
| DFJMGIHN_147 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DFJMGIHN_7 | 54792 | 77872 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581 |
| DFJMGIHN_19 | 54525 | 68613 | False | Siphoviridae | VOG0542, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
| DFJMGIHN_103 | 1313 | 23695 | False | Siphoviridae | VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| DFJMGIHN_106 | 2318 | 30837 | False | Siphoviridae | VOG5008, VOG4887, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG0630, VOG5967, VOG0198, VOG0686, VOG5317, VOG5280 |
| DFJMGIHN_111 | 7254 | 27209 | False | Siphoviridae | VOG0703, VOG0641, VOG5070, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720 |
| DFJMGIHN_117 | 64828 | 69138 | False | Siphoviridae | VOG3459, VOG0682, VOG1521, VOG4602, VOG6495, VOG4552, VOG2776 |
| DFJMGIHN_117 | 79357 | 105839 | False | Siphoviridae | VOG0686, VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG9888, VOG0648, VOG8917, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)