Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGEOFNMH_25 | 26648 | 26454 | CspA | 1.12e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGEOFNMH_1 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_3 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_4 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_5 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_6 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_7 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_8 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_9 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_10 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_11 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_12 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_13 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_14 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_15 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_16 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_17 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_18 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_19 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_20 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_21 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_22 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_23 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_25 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_26 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_27 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_28 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_29 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_30 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_31 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_32 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_33 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_34 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_37 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_38 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_39 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_40 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_41 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_42 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_43 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_44 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_45 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_47 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_48 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_49 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_50 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_51 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_52 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_53 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_54 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_56 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_58 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_59 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_60 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_61 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_62 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_63 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_64 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_65 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_66 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_67 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_69 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_70 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_71 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_72 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_73 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_77 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_80 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_88 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_92 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_99 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_104 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_115 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_126 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_133 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_134 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_135 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_136 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_137 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_138 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_139 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_140 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_142 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_143 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_144 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_145 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_146 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_147 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_148 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_149 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_150 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_151 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_153 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_154 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_155 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_156 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_157 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_158 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_159 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_160 | 0.0 | 1.0 | 0.0 |
| NGEOFNMH_161 | 1.0 | 0.0 | 1.0 |
| NGEOFNMH_162 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGEOFNMH_37 | 40578 | 54666 | False | Siphoviridae | VOG3490, VOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG0542 |
| NGEOFNMH_134 | 6539 | 35058 | False | Siphoviridae | VOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG5967, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG5008 |
| NGEOFNMH_135 | 1647 | 24029 | False | Siphoviridae | VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| NGEOFNMH_149 | 64828 | 69138 | False | Siphoviridae | VOG3459, VOG0682, VOG1521, VOG4602, VOG6495, VOG4552, VOG2776 |
| NGEOFNMH_149 | 79357 | 105839 | False | Siphoviridae | VOG0686, VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG9888, VOG0648, VOG8917, VOG0703 |
| NGEOFNMH_161 | 54997 | 83711 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG4972, VOG8453, VOG0198, VOG6616, VOG4693, VOG1183, VOG1414, VOG3307, VOG10904 |
| NGEOFNMH_161 | 83939 | 93990 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3478, VOG0707, VOG8520, VOG8520, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)