Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
PIEBGFGG_1361125918CspA7.71e-29cold shock protein84.6198.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
PIEBGFGG_20.01.00.0
PIEBGFGG_90.01.00.0
PIEBGFGG_100.01.00.0
PIEBGFGG_110.01.00.0
PIEBGFGG_120.01.00.0
PIEBGFGG_130.01.00.0
PIEBGFGG_140.01.00.0
PIEBGFGG_150.01.00.0
PIEBGFGG_161.00.01.0
PIEBGFGG_170.01.00.0
PIEBGFGG_180.01.00.0
PIEBGFGG_200.01.00.0
PIEBGFGG_210.01.00.0
PIEBGFGG_220.01.00.0
PIEBGFGG_230.01.00.0
PIEBGFGG_240.01.00.0
PIEBGFGG_250.01.00.0
PIEBGFGG_260.01.00.0
PIEBGFGG_271.00.01.0
PIEBGFGG_280.01.00.0
PIEBGFGG_290.01.00.0
PIEBGFGG_310.01.00.0
PIEBGFGG_320.01.00.0
PIEBGFGG_330.01.00.0
PIEBGFGG_340.01.00.0
PIEBGFGG_350.01.00.0
PIEBGFGG_360.01.00.0
PIEBGFGG_370.01.00.0
PIEBGFGG_381.00.01.0
PIEBGFGG_390.01.00.0
PIEBGFGG_401.00.01.0
PIEBGFGG_420.01.00.0
PIEBGFGG_430.01.00.0
PIEBGFGG_441.00.01.0
PIEBGFGG_450.01.00.0
PIEBGFGG_460.01.00.0
PIEBGFGG_470.01.00.0
PIEBGFGG_480.01.00.0
PIEBGFGG_490.01.00.0
PIEBGFGG_500.01.00.0
PIEBGFGG_510.01.00.0
PIEBGFGG_530.01.00.0
PIEBGFGG_540.01.00.0
PIEBGFGG_551.00.01.0
PIEBGFGG_560.01.00.0
PIEBGFGG_570.01.00.0
PIEBGFGG_581.00.01.0
PIEBGFGG_591.00.01.0
PIEBGFGG_601.00.01.0
PIEBGFGG_620.01.00.0
PIEBGFGG_641.00.01.0
PIEBGFGG_651.00.01.0
PIEBGFGG_660.01.00.0
PIEBGFGG_670.01.00.0
PIEBGFGG_681.00.01.0
PIEBGFGG_691.00.01.0
PIEBGFGG_701.00.01.0
PIEBGFGG_721.00.01.0
PIEBGFGG_730.01.00.0
PIEBGFGG_750.01.00.0
PIEBGFGG_761.00.01.0
PIEBGFGG_771.00.01.0
PIEBGFGG_780.01.00.0
PIEBGFGG_790.01.00.0
PIEBGFGG_801.00.01.0
PIEBGFGG_810.01.00.0
PIEBGFGG_821.00.01.0
PIEBGFGG_831.00.01.0
PIEBGFGG_841.00.01.0
PIEBGFGG_850.01.00.0
PIEBGFGG_861.00.01.0
PIEBGFGG_871.00.01.0
PIEBGFGG_900.01.00.0
PIEBGFGG_960.01.00.0
PIEBGFGG_1020.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
PIEBGFGG_14860431419FalseSiphoviridaeVOG0703, VOG1637, VOG5070, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG1300, VOG4564, VOG0720, VOG10227, VOG0944, VOG4618
PIEBGFGG_161695943161FalseSiphoviridaeVOG0866, VOG0195, VOG0822, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0660, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626, VOG1637
PIEBGFGG_27319426711FalseSiphoviridaeVOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG0565, VOG0648
PIEBGFGG_425323981070TrueSiphoviridaeVOG4571, VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG6154, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052
PIEBGFGG_902051253805FalseSiphoviridaeVOG3479, VOG4602, VOG9667, VOG3622, VOG3478, VOG0321, VOG0322, VOG7263, VOG4548, VOG7264, VOG4693, VOG7265, VOG0686, VOG6495, VOG4010, VOG6495, VOG4690, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG4190, VOG5070, VOG0641

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements