Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGPDNALK_36 | 67248 | 67054 | CspA | 1.71e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGPDNALK_2 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_12 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_14 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_15 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_16 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_17 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_18 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_19 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_20 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_21 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_23 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_24 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_25 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_26 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_27 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_28 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_29 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_30 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_31 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_32 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_34 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_35 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_36 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_37 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_38 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_39 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_40 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_41 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_42 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_43 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_45 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_46 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_47 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_48 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_49 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_50 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_51 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_52 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_53 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_54 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_56 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_57 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_58 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_59 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_60 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_61 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_62 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_63 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_64 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_65 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_67 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_68 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_70 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_71 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_72 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_73 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_74 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_75 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_76 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_78 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_79 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_80 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_81 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_82 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_83 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_84 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_85 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_86 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_87 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_89 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_90 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_91 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_92 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_93 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_94 | 1.0 | 0.0 | 1.0 |
| NGPDNALK_96 | 0.0 | 1.0 | 0.0 |
| NGPDNALK_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGPDNALK_12 | 55137 | 77514 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886 |
| NGPDNALK_23 | 3248 | 25630 | False | Siphoviridae | VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| NGPDNALK_25 | 6539 | 35058 | False | Siphoviridae | VOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG5967, VOG0630, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG5008 |
| NGPDNALK_31 | 689 | 22766 | False | Siphoviridae | VOG10227, VOG0720, VOG4564, VOG0638, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG5070, VOG0641, VOG0703 |
| NGPDNALK_60 | 41730 | 55818 | False | Siphoviridae | VOG3490, VOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG0542 |
Phigaro v2.4.0 (Database: Jan. 2024 release)