Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
JNNELJDD_864438744581CspA8.20e-29cold shock protein84.6198.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
JNNELJDD_20.01.00.0
JNNELJDD_70.01.00.0
JNNELJDD_80.01.00.0
JNNELJDD_90.01.00.0
JNNELJDD_100.01.00.0
JNNELJDD_110.01.00.0
JNNELJDD_120.01.00.0
JNNELJDD_130.01.00.0
JNNELJDD_140.01.00.0
JNNELJDD_150.01.00.0
JNNELJDD_160.01.00.0
JNNELJDD_180.01.00.0
JNNELJDD_190.01.00.0
JNNELJDD_200.01.00.0
JNNELJDD_211.00.01.0
JNNELJDD_220.01.00.0
JNNELJDD_230.01.00.0
JNNELJDD_240.01.00.0
JNNELJDD_250.01.00.0
JNNELJDD_260.01.00.0
JNNELJDD_270.01.00.0
JNNELJDD_290.01.00.0
JNNELJDD_300.01.00.0
JNNELJDD_310.01.00.0
JNNELJDD_320.01.00.0
JNNELJDD_330.01.00.0
JNNELJDD_340.01.00.0
JNNELJDD_351.00.01.0
JNNELJDD_360.01.00.0
JNNELJDD_370.01.00.0
JNNELJDD_380.01.00.0
JNNELJDD_400.01.00.0
JNNELJDD_410.01.00.0
JNNELJDD_420.01.00.0
JNNELJDD_431.00.01.0
JNNELJDD_441.00.01.0
JNNELJDD_450.01.00.0
JNNELJDD_460.01.00.0
JNNELJDD_470.01.00.0
JNNELJDD_490.01.00.0
JNNELJDD_510.01.00.0
JNNELJDD_521.00.01.0
JNNELJDD_530.01.00.0
JNNELJDD_541.00.01.0
JNNELJDD_550.01.00.0
JNNELJDD_561.00.01.0
JNNELJDD_571.00.01.0
JNNELJDD_580.01.00.0
JNNELJDD_590.01.00.0
JNNELJDD_601.00.01.0
JNNELJDD_611.00.01.0
JNNELJDD_620.01.00.0
JNNELJDD_641.00.01.0
JNNELJDD_650.01.00.0
JNNELJDD_661.00.01.0
JNNELJDD_710.01.00.0
JNNELJDD_740.01.00.0
JNNELJDD_820.01.00.0
JNNELJDD_860.01.00.0
JNNELJDD_930.01.00.0
JNNELJDD_980.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
JNNELJDD_131858944869FalseSiphoviridaeVOG0686, VOG9927, VOG1183, VOG9500, VOG0198, VOG1422, VOG4618, VOG0611, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG1224, VOG4660
JNNELJDD_161779227829FalseSiphoviridaeVOG6914, VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG0686, VOG1183, VOG2388, VOG4693
JNNELJDD_62384432984FalseSiphoviridaeVOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG9998, VOG1637

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements