Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGJFMMIN_123 | 52514 | 52708 | CspA | 1.74e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GGJFMMIN_10 | 1685 | 2715 | repUS67 | 1047 / 1039 | 85.29 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGJFMMIN_3 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_4 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_5 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_6 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_7 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_8 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_9 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_10 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_11 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_12 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_13 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_14 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_15 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_16 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_17 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_18 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_19 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_20 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_21 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_22 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_25 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_26 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_27 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_28 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_29 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_30 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_31 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_32 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_33 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_34 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_36 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_37 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_38 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_39 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_40 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_41 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_42 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_43 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_44 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_45 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_47 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_48 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_49 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_50 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_51 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_54 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_66 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_73 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_84 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_95 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_103 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_104 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_106 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_107 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_108 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_109 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_111 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_112 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_113 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_114 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_115 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_116 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_117 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_118 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_119 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_120 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_122 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_123 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_124 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_125 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_126 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_127 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_128 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_129 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_130 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_131 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_133 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_134 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_135 | 1.0 | 0.0 | 1.0 |
| GGJFMMIN_136 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_137 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_138 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_139 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_140 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_141 | 0.0 | 1.0 | 0.0 |
| GGJFMMIN_142 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGJFMMIN_18 | 2554 | 25634 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0660, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626 |
| GGJFMMIN_30 | 18115 | 32203 | False | Siphoviridae | VOG0542, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
| GGJFMMIN_30 | 50494 | 82284 | False | Siphoviridae | VOG0862, VOG6495, VOG3622, VOG3478, VOG0321, VOG4548, VOG6394, VOG0322, VOG6545, VOG4632, VOG4609, VOG5664, VOG5016, VOG0327, VOG2352, VOG6495, VOG3307, VOG4690, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG0083, VOG5070 |
| GGJFMMIN_124 | 2810 | 22341 | False | Siphoviridae | VOG0641, VOG5070, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720 |
| GGJFMMIN_135 | 19768 | 24788 | False | Unknown | VOG0377, VOG4593, VOG0991, VOG1344 |
| GGJFMMIN_135 | 87369 | 104601 | False | Siphoviridae | VOG0054, VOG0753, VOG0648, VOG9091, VOG10609, VOG4783, VOG5534, VOG9713, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524 |
Phigaro v2.4.0 (Database: Jan. 2024 release)