Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCLBJOKE_100 | 44790 | 44984 | CspA | 8.24e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCLBJOKE_12 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_25 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_29 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_31 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_32 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_33 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_34 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_35 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_36 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_38 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_39 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_40 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_41 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_42 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_43 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_44 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_45 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_46 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_47 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_49 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_50 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_51 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_52 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_53 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_54 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_55 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_56 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_57 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_58 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_60 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_61 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_62 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_63 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_64 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_65 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_66 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_67 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_68 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_69 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_71 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_72 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_73 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_74 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_75 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_76 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_77 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_78 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_79 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_80 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_82 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_83 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_84 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_85 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_86 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_87 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_88 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_90 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_91 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_93 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_94 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_95 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_96 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_97 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_98 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_100 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_101 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_102 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_103 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_104 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_105 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_107 | 0.0 | 1.0 | 0.0 |
| MCLBJOKE_108 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_109 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_111 | 1.0 | 0.0 | 1.0 |
| MCLBJOKE_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCLBJOKE_43 | 4215 | 30495 | False | Siphoviridae | VOG4705, VOG4660, VOG1224, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG1300, VOG4564, VOG0720, VOG10227, VOG0611, VOG4618, VOG1422, VOG0198, VOG9500, VOG1183, VOG9927, VOG0686 |
| MCLBJOKE_46 | 3898 | 30402 | False | Siphoviridae | VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1345, VOG4544, VOG4581, VOG4841 |
| MCLBJOKE_50 | 17321 | 27358 | False | Siphoviridae | VOG6914, VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG0686, VOG1183, VOG2388, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)