Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MILEJKDO_75 | 96003 | 96197 | CspA | 1.39e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MILEJKDO_1 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_2 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_3 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_4 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_5 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_6 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_7 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_8 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_9 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_10 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_11 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_12 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_13 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_14 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_15 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_16 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_17 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_18 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_19 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_20 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_21 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_22 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_23 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_24 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_25 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_26 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_27 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_28 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_29 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_31 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_32 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_33 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_34 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_35 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_36 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_37 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_39 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_40 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_41 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_42 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_43 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_44 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_45 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_46 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_47 | 1.0 | 0.0 | 1.0 |
| MILEJKDO_51 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_55 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_63 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_66 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_75 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_77 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_87 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_88 | 0.0 | 1.0 | 0.0 |
| MILEJKDO_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MILEJKDO_2 | 3505 | 28608 | False | Siphoviridae | VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG6163, VOG4545, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866, VOG6183, VOG0198, VOG0686 |
| MILEJKDO_10 | 6007 | 22943 | False | Siphoviridae | VOG5361, VOG9998, VOG0703, VOG0641, VOG5070, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353 |
Phigaro v2.4.0 (Database: Jan. 2024 release)