Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EPEMNGIC_108 | 40825 | 41019 | CspA | 5.96e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPEMNGIC_1 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_3 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_4 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_5 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_6 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_7 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_8 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_9 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_10 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_11 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_12 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_13 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_14 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_15 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_16 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_17 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_18 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_19 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_20 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_21 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_23 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_25 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_26 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_27 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_28 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_29 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_30 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_31 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_32 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_33 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_34 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_36 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_37 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_38 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_39 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_40 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_41 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_42 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_43 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_44 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_45 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_47 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_48 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_49 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_50 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_51 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_52 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_53 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_54 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_55 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_56 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_59 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_60 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_65 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_68 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_76 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_80 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_87 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_92 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_98 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_103 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_108 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_109 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_110 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_111 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_112 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_113 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_114 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_115 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_116 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_117 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_118 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_119 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_120 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_121 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_122 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_123 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_124 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_125 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_126 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_127 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_128 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_129 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_130 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_132 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_133 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_134 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_135 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_136 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_137 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_138 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_139 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_140 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_141 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_143 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_144 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_145 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_146 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_147 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_148 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_149 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_150 | 0.0 | 1.0 | 0.0 |
| EPEMNGIC_151 | 1.0 | 0.0 | 1.0 |
| EPEMNGIC_152 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EPEMNGIC_118 | 3505 | 28608 | False | Siphoviridae | VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG6163, VOG4545, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866, VOG6183, VOG0198, VOG0686 |
| EPEMNGIC_127 | 6380 | 22717 | False | Siphoviridae | VOG9998, VOG0703, VOG0641, VOG5070, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353 |
Phigaro v2.4.0 (Database: Jan. 2024 release)