Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNFMDFND_73 | 359 | 165 | CspA | 1.40e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNFMDFND_1 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_2 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_3 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_4 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_5 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_6 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_7 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_8 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_9 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_10 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_11 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_12 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_13 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_14 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_15 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_16 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_17 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_18 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_19 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_20 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_21 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_22 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_23 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_24 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_25 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_26 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_27 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_28 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_29 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_31 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_32 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_33 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_34 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_35 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_36 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_37 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_38 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_39 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_40 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_41 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_42 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_43 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_44 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_45 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_46 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_47 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_48 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_49 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_50 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_51 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_52 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_53 | 1.0 | 0.0 | 1.0 |
| JNFMDFND_56 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_63 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_67 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_73 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_75 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_76 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_77 | 0.0 | 1.0 | 0.0 |
| JNFMDFND_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNFMDFND_4 | 3505 | 28608 | False | Siphoviridae | VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG6163, VOG4545, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866, VOG6183, VOG0198, VOG0686 |
| JNFMDFND_11 | 2078 | 18415 | False | Siphoviridae | VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG5070, VOG0641, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)