Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPOFPAEN_112 | 10604 | 10798 | CspA | 3.75e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPOFPAEN_3 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_4 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_5 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_6 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_7 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_8 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_9 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_10 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_11 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_12 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_13 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_14 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_15 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_17 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_18 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_19 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_20 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_21 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_22 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_23 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_25 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_26 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_27 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_28 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_29 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_30 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_31 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_32 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_34 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_36 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_37 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_39 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_40 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_41 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_42 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_43 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_44 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_45 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_48 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_51 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_55 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_64 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_75 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_86 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_94 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_95 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_96 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_97 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_98 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_99 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_101 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_102 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_103 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_104 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_105 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_106 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_107 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_108 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_109 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_110 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_112 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_113 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_114 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_115 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_116 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_117 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_118 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_119 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_120 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_121 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_123 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_124 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_125 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_126 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_127 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_128 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_129 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_130 | 1.0 | 0.0 | 1.0 |
| PPOFPAEN_131 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_132 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_134 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_135 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_136 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_137 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_138 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_139 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_140 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_141 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_142 | 0.0 | 1.0 | 0.0 |
| PPOFPAEN_143 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPOFPAEN_95 | 18589 | 44869 | False | Siphoviridae | VOG0686, VOG9927, VOG1183, VOG9500, VOG0198, VOG1422, VOG4618, VOG0611, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG1224, VOG4660 |
| PPOFPAEN_113 | 3480 | 33809 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG9998, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)