Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NEPIILCK_7 | 22336 | 22142 | CspA | 7.10e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEPIILCK_1 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_2 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_3 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_4 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_5 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_6 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_7 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_8 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_9 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_10 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_11 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_12 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_13 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_14 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_15 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_16 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_17 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_18 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_19 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_20 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_21 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_22 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_23 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_24 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_25 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_26 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_27 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_28 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_29 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_30 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_31 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_32 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_33 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_34 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_35 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_36 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_37 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_38 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_39 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_40 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_41 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_42 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_43 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_44 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_45 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_46 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_47 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_48 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_49 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_50 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_51 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_52 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_53 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_54 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_55 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_56 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_57 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_58 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_59 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_60 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_61 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_62 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_63 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_64 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_65 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_66 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_67 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_68 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_69 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_70 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_71 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_72 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_73 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_75 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_76 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_77 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_78 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_79 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_80 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_81 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_82 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_83 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_84 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_85 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_86 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_87 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_88 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_89 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_90 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_91 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_92 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_93 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_94 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_95 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_96 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_97 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_98 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_99 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_101 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_102 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_103 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_105 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_106 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_107 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_109 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_116 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_121 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_127 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_133 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_145 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_149 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_157 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_160 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_168 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_170 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_171 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_172 | 1.0 | 0.0 | 1.0 |
| NEPIILCK_173 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_174 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_175 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_176 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_177 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_178 | 0.0 | 1.0 | 0.0 |
| NEPIILCK_179 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEPIILCK_8 | 5548 | 15585 | False | Siphoviridae | VOG6495, VOG4693, VOG2388, VOG1183, VOG0686, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG7812, VOG3478, VOG0707, VOG9469, VOG1564, VOG2124, VOG8520, VOG4602 |
| NEPIILCK_171 | 4215 | 30495 | False | Siphoviridae | VOG4705, VOG4660, VOG1224, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG1300, VOG4564, VOG0720, VOG10227, VOG0611, VOG4618, VOG1422, VOG0198, VOG9500, VOG1183, VOG9927, VOG0686 |
| NEPIILCK_179 | 3818 | 30322 | False | Siphoviridae | VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1345, VOG4544, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)