Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPGCKNOP_97 | 44387 | 44581 | CspA | 8.19e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPGCKNOP_1 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_2 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_3 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_4 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_5 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_6 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_7 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_8 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_9 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_10 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_11 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_12 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_13 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_14 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_15 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_16 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_17 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_18 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_19 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_20 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_21 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_22 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_23 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_24 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_25 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_26 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_27 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_28 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_29 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_30 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_31 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_32 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_34 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_35 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_36 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_37 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_38 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_39 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_40 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_41 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_42 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_45 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_46 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_47 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_48 | 1.0 | 0.0 | 1.0 |
| LPGCKNOP_51 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_56 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_63 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_67 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_75 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_78 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_86 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_89 | 0.0 | 1.0 | 0.0 |
| LPGCKNOP_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPGCKNOP_3 | 17793 | 27830 | False | Siphoviridae | VOG6914, VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG0686, VOG1183, VOG2388, VOG4693 |
| LPGCKNOP_3 | 49463 | 79018 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG9998, VOG1637 |
| LPGCKNOP_89 | 18589 | 44869 | False | Siphoviridae | VOG0686, VOG9927, VOG1183, VOG9500, VOG0198, VOG1422, VOG4618, VOG0611, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG1224, VOG4660 |
Phigaro v2.4.0 (Database: Jan. 2024 release)