Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJBHNLOP_65 | 20044 | 18866 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| HJBHNLOP_76 | 27054 | 28559 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| HJBHNLOP_84 | 113378 | 112509 | pdxS | 1.13e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HJBHNLOP_44 | 59230 | 59943 | CodY | 6.35e-118 | nutrient-responsive regulator | 83.19 | 91.89 | ACJ80679 |
| HJBHNLOP_44 | 59227 | 59943 | codY | 1.74e-114 | global regulator and isoleucine sensor | 81.17 | 92.28 | ASW39076 |
| HJBHNLOP_90 | 27829 | 27260 | ClpP | 1.22e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| HJBHNLOP_59 | 37958 | 38644 | WalR | 7.05e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| HJBHNLOP_84 | 98722 | 99114 | spxA1 | 8.82e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| HJBHNLOP_84 | 98722 | 99114 | spx | 1.91e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| HJBHNLOP_66 | 33777 | 33535 | SpoVG | 8.02e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| HJBHNLOP_102 | 12724 | 12921 | CspA | 3.02e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| HJBHNLOP_106 | 46977 | 47171 | CspD | 1.74e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| HJBHNLOP_106 | 46977 | 47174 | CspB | 1.17e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJBHNLOP_1 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_2 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_3 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_4 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_5 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_6 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_7 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_8 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_9 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_10 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_11 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_12 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_13 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_14 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_15 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_16 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_17 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_18 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_19 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_20 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_21 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_22 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_23 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_24 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_25 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_26 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_27 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_28 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_29 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_31 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_32 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_33 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_34 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_35 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_37 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_38 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_40 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_41 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_44 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_55 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_57 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_58 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_59 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_60 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_61 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_62 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_63 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_64 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_65 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_66 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_67 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_68 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_69 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_70 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_71 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_72 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_73 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_74 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_75 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_76 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_77 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_78 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_79 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_80 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_81 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_82 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_83 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_84 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_85 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_86 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_87 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_88 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_89 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_90 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_91 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_92 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_93 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_94 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_95 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_96 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_97 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_98 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_99 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_100 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_101 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_102 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_103 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_104 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_105 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_106 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_107 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_108 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_109 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_110 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_111 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_112 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_113 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_114 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_115 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_116 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_117 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_118 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_119 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_120 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_121 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_122 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_123 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_124 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_125 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_126 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_127 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_128 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_129 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_130 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_131 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_132 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_133 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_134 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_135 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_136 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_137 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_138 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_139 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_140 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_141 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_142 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_143 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_144 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_145 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_146 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_147 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_148 | 0.0 | 1.0 | 0.0 |
| HJBHNLOP_149 | 1.0 | 0.0 | 1.0 |
| HJBHNLOP_150 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJBHNLOP_60 | 5014 | 36196 | False | Siphoviridae | VOG4602, VOG9667, VOG9667, VOG4552, VOG8241, VOG3549, VOG1878, VOG4600, VOG1309, VOG4855, VOG9600, VOG0025, VOG0397, VOG0536, VOG0195, VOG6440, VOG1298, VOG3553, VOG8445, VOG0198, VOG0611, VOG7407, VOG7708, VOG4568, VOG3210, VOG4711, VOG1581, VOG3888, VOG5660, VOG4557, VOG6163, VOG0801, VOG4619, VOG6373 |
| HJBHNLOP_62 | 24247 | 60901 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG5793, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)