Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NOMJPEFH_34 | 1350 | 1994 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
| NOMJPEFH_85 | 691 | 2616 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NOMJPEFH_85 | 691 | 2603 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 99.64 | FN396364 |
| NOMJPEFH_34 | 1350 | 1994 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NOMJPEFH_85 | 691 | 2604 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_000691721.1 |
| NOMJPEFH_34 | 1350 | 1991 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NOMJPEFH_1 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_2 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_3 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_4 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_5 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_6 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_7 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_8 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_9 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_10 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_11 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_12 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_13 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_14 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_16 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_17 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_18 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_19 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_20 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_21 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_22 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_23 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_24 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_25 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_26 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_28 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_29 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_30 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_31 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_32 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_33 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_34 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_35 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_36 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_37 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_38 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_39 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_40 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_41 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_42 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_43 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_44 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_45 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_46 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_47 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_48 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_49 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_50 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_51 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_52 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_53 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_54 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_56 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_57 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_58 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_59 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_60 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_61 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_62 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_63 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_64 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_65 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_66 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_67 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_68 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_69 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_70 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_71 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_72 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_73 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_74 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_75 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_76 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_77 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_78 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_79 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_80 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_81 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_82 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_83 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_84 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_85 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_86 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_87 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_88 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_89 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_91 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_92 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_93 | 1.0 | 0.0 | 1.0 |
| NOMJPEFH_94 | 0.0 | 1.0 | 0.0 |
| NOMJPEFH_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NOMJPEFH_19 | 9500 | 48415 | False | Myoviridae | VOG3870, VOG0862, VOG9667, VOG3622, VOG7236, VOG7225, VOG2228, VOG0321, VOG0283, VOG4566, VOG0189, VOG0275, VOG0195, VOG4579, VOG4693, VOG0634, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG3435, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4763, VOG6540, VOG9945, VOG4705, VOG8917, VOG9888, VOG0703 |
| NOMJPEFH_29 | 59351 | 60029 | False | Unknown | VOG9667 |
| NOMJPEFH_29 | 83605 | 104793 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8609, VOG0207, VOG4586, VOG0209, VOG6163, VOG4633, VOG4628, VOG9945, VOG4705, VOG0861, VOG7017 |
| NOMJPEFH_95 | 34693 | 59533 | False | Siphoviridae | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502 |
Phigaro v2.4.0 (Database: Jan. 2024 release)