Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MFGNCFNN_81 | 21410 | 22786 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| MFGNCFNN_51 | 4051 | 4695 | vatE | ARO:3002844 | vatE | 96.73 | 100.00 | AF242872.1 |
| MFGNCFNN_81 | 3047 | 3532 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| MFGNCFNN_81 | 317 | 1054 | ErmT | ARO:3000595 | ErmT | 98.76 | 100.41 | M64090.1 |
| MFGNCFNN_106 | 119 | 2044 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MFGNCFNN_81 | 21410 | 22786 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 100.00 | AY081910 |
| MFGNCFNN_81 | 327 | 1054 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 98.91 | AF310974 |
| MFGNCFNN_106 | 132 | 2044 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 99.64 | FN396364 |
| MFGNCFNN_81 | 3047 | 3532 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
| MFGNCFNN_51 | 4051 | 4695 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.28 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MFGNCFNN_81 | 3050 | 3532 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| MFGNCFNN_106 | 131 | 2044 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_000691721.1 |
| MFGNCFNN_81 | 21413 | 22786 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| MFGNCFNN_51 | 4051 | 4692 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.07 | 100.00 | WP_063856929.1 |
| MFGNCFNN_81 | 332 | 1054 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 98.76 | 98.77 | WP_002345002.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MFGNCFNN_52 | 10444 | 11598 | rep31 | 1160 / 1155 | 85.52 | DQ489739 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MFGNCFNN_1 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_2 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_3 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_4 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_5 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_6 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_7 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_8 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_9 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_10 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_11 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_12 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_13 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_14 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_15 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_17 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_18 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_19 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_20 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_21 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_22 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_23 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_24 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_25 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_26 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_27 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_28 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_29 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_30 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_31 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_32 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_33 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_34 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_35 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_36 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_38 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_39 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_41 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_42 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_43 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_44 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_45 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_46 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_47 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_48 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_49 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_50 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_51 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_52 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_53 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_54 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_55 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_56 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_57 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_58 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_59 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_60 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_61 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_62 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_63 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_64 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_65 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_66 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_67 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_68 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_69 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_70 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_71 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_72 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_73 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_74 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_75 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_76 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_77 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_78 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_79 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_80 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_81 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_82 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_84 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_85 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_86 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_87 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_88 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_89 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_90 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_91 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_92 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_93 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_94 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_95 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_96 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_97 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_98 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_99 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_100 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_101 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_102 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_103 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_104 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_105 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_106 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_107 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_108 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_109 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_110 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_111 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_112 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_113 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_114 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_115 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_116 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_117 | 1.0 | 0.0 | 1.0 |
| MFGNCFNN_118 | 0.0 | 1.0 | 0.0 |
| MFGNCFNN_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MFGNCFNN_54 | 6885 | 27761 | False | Siphoviridae | VOG7017, VOG0861, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)