Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHLFHNML_29 | 32861 | 33706 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
| NHLFHNML_20 | 23275 | 24045 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| NHLFHNML_49 | 7129 | 8181 | clbC | ARO:3002816 | clbC | 96.57 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHLFHNML_29 | 32861 | 33706 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.65 | 100.00 | AY234334 |
| NHLFHNML_20 | 23275 | 24045 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHLFHNML_29 | 32861 | 33703 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| NHLFHNML_20 | 26459 | 27361 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| NHLFHNML_49 | 7132 | 8181 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 96.57 | 100.00 | WP_011245929.1 |
| NHLFHNML_20 | 23275 | 24042 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NHLFHNML_111 | 8227 | 8877 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.77 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHLFHNML_77 | 39423 | 38281 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| NHLFHNML_79 | 42487 | 42245 | SpoVG | 2.31e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NHLFHNML_106 | 4200 | 4397 | CspA | 4.56e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| NHLFHNML_64 | 25592 | 25780 | CspB | 5.50e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHLFHNML_1 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_2 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_3 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_4 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_5 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_6 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_7 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_8 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_9 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_10 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_11 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_12 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_13 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_14 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_18 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_19 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_20 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_21 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_22 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_23 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_24 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_25 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_26 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_27 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_28 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_29 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_30 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_31 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_32 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_33 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_34 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_35 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_36 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_37 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_38 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_40 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_41 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_42 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_43 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_44 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_45 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_46 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_47 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_48 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_49 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_50 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_51 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_52 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_53 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_54 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_55 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_56 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_57 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_58 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_60 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_62 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_63 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_64 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_65 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_66 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_67 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_68 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_69 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_70 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_71 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_72 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_73 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_74 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_75 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_76 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_77 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_78 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_79 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_80 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_81 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_82 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_83 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_84 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_85 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_86 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_87 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_88 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_89 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_90 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_91 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_92 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_93 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_94 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_95 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_96 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_97 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_98 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_99 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_100 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_101 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_102 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_103 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_104 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_105 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_106 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_107 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_108 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_109 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_110 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_111 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_112 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_113 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_115 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_116 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_117 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_118 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_119 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_120 | 1.0 | 0.0 | 1.0 |
| NHLFHNML_121 | 0.0 | 1.0 | 0.0 |
| NHLFHNML_123 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NHLFHNML_4 | 15346 | 41257 | False | Siphoviridae | VOG6242, VOG5447, VOG7761, VOG5361, VOG0796, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG4619, VOG0565, VOG4669, VOG0753, VOG0602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)