Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPEOOGGG_7 | 48842 | 49687 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| PPEOOGGG_109 | 8024 | 9076 | clbC | ARO:3002816 | clbC | 96.86 | 100.00 | AP006627.1 |
| PPEOOGGG_27 | 4037 | 4807 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PPEOOGGG_7 | 48842 | 49687 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.11 | 100.00 | AY234334 |
| PPEOOGGG_27 | 4037 | 4807 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.55 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPEOOGGG_7 | 48845 | 49687 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| PPEOOGGG_27 | 721 | 1623 | blaBCL | BCL family class A beta-lactamase | BLASTX | 97.01 | 100.00 | WP_065825670.1 |
| PPEOOGGG_109 | 8024 | 9073 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 96.86 | 100.00 | WP_011245929.1 |
| PPEOOGGG_27 | 4040 | 4807 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PPEOOGGG_79 | 22810 | 23460 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.31 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPEOOGGG_80 | 32502 | 33638 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| PPEOOGGG_88 | 42482 | 42240 | SpoVG | 1.38e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PPEOOGGG_94 | 6814 | 7011 | CspA | 6.80e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| PPEOOGGG_102 | 25299 | 25487 | CspB | 3.14e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPEOOGGG_1 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_2 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_3 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_5 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_6 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_7 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_9 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_10 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_11 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_12 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_13 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_14 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_15 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_16 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_17 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_18 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_19 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_20 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_21 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_22 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_23 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_24 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_25 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_26 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_27 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_28 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_32 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_33 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_34 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_35 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_36 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_37 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_38 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_39 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_40 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_41 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_42 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_43 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_44 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_45 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_46 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_47 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_48 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_49 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_50 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_51 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_52 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_53 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_54 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_55 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_56 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_57 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_58 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_59 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_60 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_61 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_62 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_63 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_64 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_65 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_66 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_67 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_68 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_69 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_70 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_71 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_72 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_73 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_74 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_76 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_78 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_79 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_80 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_81 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_82 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_83 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_84 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_85 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_86 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_87 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_88 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_89 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_90 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_91 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_92 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_93 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_94 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_95 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_96 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_97 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_98 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_99 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_100 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_101 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_102 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_103 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_104 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_105 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_106 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_107 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_108 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_109 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_110 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_111 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_112 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_113 | 0.0 | 1.0 | 0.0 |
| PPEOOGGG_114 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_115 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_116 | 1.0 | 0.0 | 1.0 |
| PPEOOGGG_117 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPEOOGGG_57 | 24680 | 43751 | False | Siphoviridae | VOG4619, VOG9712, VOG0801, VOG6163, VOG0725, VOG2621, VOG0799, VOG0697, VOG4564, VOG5270, VOG3676 |
| PPEOOGGG_57 | 66562 | 75895 | False | Siphoviridae | VOG10937, VOG5753, VOG7255, VOG0052, VOG1563, VOG4551, VOG0025 |
Phigaro v2.4.0 (Database: Jan. 2024 release)