Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COABFCDM_143 | 33018 | 33863 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| COABFCDM_40 | 5935 | 6987 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
| COABFCDM_112 | 4039 | 4809 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COABFCDM_143 | 33018 | 33863 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| COABFCDM_112 | 4039 | 4809 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COABFCDM_143 | 33018 | 33860 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| COABFCDM_40 | 5935 | 6984 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| COABFCDM_112 | 723 | 1625 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| COABFCDM_112 | 4042 | 4809 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| COABFCDM_126 | 17794 | 18444 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.77 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COABFCDM_100 | 15631 | 14489 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| COABFCDM_118 | 36109 | 36351 | SpoVG | 1.70e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| COABFCDM_155 | 6134 | 5937 | CspA | 1.45e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| COABFCDM_128 | 25404 | 25592 | CspB | 5.47e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COABFCDM_1 | 0.0 | 1.0 | 0.0 |
| COABFCDM_5 | 1.0 | 0.0 | 1.0 |
| COABFCDM_6 | 0.0 | 1.0 | 0.0 |
| COABFCDM_7 | 0.0 | 1.0 | 0.0 |
| COABFCDM_8 | 1.0 | 0.0 | 1.0 |
| COABFCDM_9 | 0.0 | 1.0 | 0.0 |
| COABFCDM_10 | 0.0 | 1.0 | 0.0 |
| COABFCDM_11 | 0.0 | 1.0 | 0.0 |
| COABFCDM_13 | 0.0 | 1.0 | 0.0 |
| COABFCDM_14 | 0.0 | 1.0 | 0.0 |
| COABFCDM_15 | 0.0 | 1.0 | 0.0 |
| COABFCDM_16 | 0.0 | 1.0 | 0.0 |
| COABFCDM_17 | 0.0 | 1.0 | 0.0 |
| COABFCDM_18 | 0.0 | 1.0 | 0.0 |
| COABFCDM_19 | 0.0 | 1.0 | 0.0 |
| COABFCDM_20 | 0.0 | 1.0 | 0.0 |
| COABFCDM_21 | 0.0 | 1.0 | 0.0 |
| COABFCDM_22 | 0.0 | 1.0 | 0.0 |
| COABFCDM_23 | 0.0 | 1.0 | 0.0 |
| COABFCDM_24 | 0.0 | 1.0 | 0.0 |
| COABFCDM_25 | 0.0 | 1.0 | 0.0 |
| COABFCDM_26 | 0.0 | 1.0 | 0.0 |
| COABFCDM_28 | 0.0 | 1.0 | 0.0 |
| COABFCDM_29 | 0.0 | 1.0 | 0.0 |
| COABFCDM_30 | 0.0 | 1.0 | 0.0 |
| COABFCDM_31 | 0.0 | 1.0 | 0.0 |
| COABFCDM_32 | 0.0 | 1.0 | 0.0 |
| COABFCDM_33 | 1.0 | 0.0 | 1.0 |
| COABFCDM_34 | 1.0 | 0.0 | 1.0 |
| COABFCDM_35 | 0.0 | 1.0 | 0.0 |
| COABFCDM_36 | 0.0 | 1.0 | 0.0 |
| COABFCDM_37 | 0.0 | 1.0 | 0.0 |
| COABFCDM_38 | 0.0 | 1.0 | 0.0 |
| COABFCDM_39 | 0.0 | 1.0 | 0.0 |
| COABFCDM_40 | 0.0 | 1.0 | 0.0 |
| COABFCDM_41 | 0.0 | 1.0 | 0.0 |
| COABFCDM_42 | 0.0 | 1.0 | 0.0 |
| COABFCDM_43 | 0.0 | 1.0 | 0.0 |
| COABFCDM_44 | 0.0 | 1.0 | 0.0 |
| COABFCDM_45 | 1.0 | 0.0 | 1.0 |
| COABFCDM_46 | 0.0 | 1.0 | 0.0 |
| COABFCDM_47 | 0.0 | 1.0 | 0.0 |
| COABFCDM_48 | 0.0 | 1.0 | 0.0 |
| COABFCDM_49 | 0.0 | 1.0 | 0.0 |
| COABFCDM_51 | 1.0 | 0.0 | 1.0 |
| COABFCDM_53 | 0.0 | 1.0 | 0.0 |
| COABFCDM_54 | 0.0 | 1.0 | 0.0 |
| COABFCDM_55 | 1.0 | 0.0 | 1.0 |
| COABFCDM_56 | 1.0 | 0.0 | 1.0 |
| COABFCDM_57 | 0.0 | 1.0 | 0.0 |
| COABFCDM_59 | 0.0 | 1.0 | 0.0 |
| COABFCDM_60 | 0.0 | 1.0 | 0.0 |
| COABFCDM_61 | 0.0 | 1.0 | 0.0 |
| COABFCDM_62 | 0.0 | 1.0 | 0.0 |
| COABFCDM_64 | 0.0 | 1.0 | 0.0 |
| COABFCDM_65 | 1.0 | 0.0 | 1.0 |
| COABFCDM_66 | 0.0 | 1.0 | 0.0 |
| COABFCDM_67 | 0.0 | 1.0 | 0.0 |
| COABFCDM_68 | 0.0 | 1.0 | 0.0 |
| COABFCDM_70 | 0.0 | 1.0 | 0.0 |
| COABFCDM_71 | 0.0 | 1.0 | 0.0 |
| COABFCDM_72 | 0.0 | 1.0 | 0.0 |
| COABFCDM_73 | 1.0 | 0.0 | 1.0 |
| COABFCDM_74 | 0.0 | 1.0 | 0.0 |
| COABFCDM_75 | 0.0 | 1.0 | 0.0 |
| COABFCDM_76 | 0.0 | 1.0 | 0.0 |
| COABFCDM_77 | 0.0 | 1.0 | 0.0 |
| COABFCDM_79 | 0.0 | 1.0 | 0.0 |
| COABFCDM_80 | 1.0 | 0.0 | 1.0 |
| COABFCDM_82 | 0.0 | 1.0 | 0.0 |
| COABFCDM_83 | 1.0 | 0.0 | 1.0 |
| COABFCDM_84 | 0.0 | 1.0 | 0.0 |
| COABFCDM_85 | 0.0 | 1.0 | 0.0 |
| COABFCDM_87 | 0.0 | 1.0 | 0.0 |
| COABFCDM_88 | 0.0 | 1.0 | 0.0 |
| COABFCDM_89 | 1.0 | 0.0 | 1.0 |
| COABFCDM_90 | 0.0 | 1.0 | 0.0 |
| COABFCDM_91 | 0.0 | 1.0 | 0.0 |
| COABFCDM_92 | 0.0 | 1.0 | 0.0 |
| COABFCDM_93 | 0.0 | 1.0 | 0.0 |
| COABFCDM_94 | 0.0 | 1.0 | 0.0 |
| COABFCDM_95 | 0.0 | 1.0 | 0.0 |
| COABFCDM_96 | 0.0 | 1.0 | 0.0 |
| COABFCDM_97 | 1.0 | 0.0 | 1.0 |
| COABFCDM_98 | 0.0 | 1.0 | 0.0 |
| COABFCDM_100 | 0.0 | 1.0 | 0.0 |
| COABFCDM_101 | 0.0 | 1.0 | 0.0 |
| COABFCDM_102 | 0.0 | 1.0 | 0.0 |
| COABFCDM_103 | 0.0 | 1.0 | 0.0 |
| COABFCDM_104 | 0.0 | 1.0 | 0.0 |
| COABFCDM_105 | 1.0 | 0.0 | 1.0 |
| COABFCDM_106 | 0.0 | 1.0 | 0.0 |
| COABFCDM_107 | 0.0 | 1.0 | 0.0 |
| COABFCDM_108 | 1.0 | 0.0 | 1.0 |
| COABFCDM_109 | 1.0 | 0.0 | 1.0 |
| COABFCDM_110 | 0.0 | 1.0 | 0.0 |
| COABFCDM_111 | 0.0 | 1.0 | 0.0 |
| COABFCDM_112 | 0.0 | 1.0 | 0.0 |
| COABFCDM_113 | 1.0 | 0.0 | 1.0 |
| COABFCDM_114 | 1.0 | 0.0 | 1.0 |
| COABFCDM_116 | 0.0 | 1.0 | 0.0 |
| COABFCDM_117 | 0.0 | 1.0 | 0.0 |
| COABFCDM_118 | 0.0 | 1.0 | 0.0 |
| COABFCDM_119 | 0.0 | 1.0 | 0.0 |
| COABFCDM_121 | 0.0 | 1.0 | 0.0 |
| COABFCDM_122 | 1.0 | 0.0 | 1.0 |
| COABFCDM_123 | 0.0 | 1.0 | 0.0 |
| COABFCDM_124 | 0.0 | 1.0 | 0.0 |
| COABFCDM_125 | 0.0 | 1.0 | 0.0 |
| COABFCDM_126 | 0.0 | 1.0 | 0.0 |
| COABFCDM_127 | 0.0 | 1.0 | 0.0 |
| COABFCDM_128 | 0.0 | 1.0 | 0.0 |
| COABFCDM_129 | 0.0 | 1.0 | 0.0 |
| COABFCDM_130 | 0.0 | 1.0 | 0.0 |
| COABFCDM_131 | 0.0 | 1.0 | 0.0 |
| COABFCDM_132 | 0.0 | 1.0 | 0.0 |
| COABFCDM_133 | 0.0 | 1.0 | 0.0 |
| COABFCDM_134 | 0.0 | 1.0 | 0.0 |
| COABFCDM_135 | 1.0 | 0.0 | 1.0 |
| COABFCDM_136 | 1.0 | 0.0 | 1.0 |
| COABFCDM_137 | 0.0 | 1.0 | 0.0 |
| COABFCDM_138 | 0.0 | 1.0 | 0.0 |
| COABFCDM_139 | 0.0 | 1.0 | 0.0 |
| COABFCDM_140 | 0.0 | 1.0 | 0.0 |
| COABFCDM_141 | 0.0 | 1.0 | 0.0 |
| COABFCDM_142 | 0.0 | 1.0 | 0.0 |
| COABFCDM_143 | 0.0 | 1.0 | 0.0 |
| COABFCDM_144 | 0.0 | 1.0 | 0.0 |
| COABFCDM_145 | 0.0 | 1.0 | 0.0 |
| COABFCDM_146 | 0.0 | 1.0 | 0.0 |
| COABFCDM_147 | 0.0 | 1.0 | 0.0 |
| COABFCDM_148 | 0.0 | 1.0 | 0.0 |
| COABFCDM_149 | 0.0 | 1.0 | 0.0 |
| COABFCDM_150 | 0.0 | 1.0 | 0.0 |
| COABFCDM_151 | 0.0 | 1.0 | 0.0 |
| COABFCDM_152 | 0.0 | 1.0 | 0.0 |
| COABFCDM_153 | 1.0 | 0.0 | 1.0 |
| COABFCDM_154 | 1.0 | 0.0 | 1.0 |
| COABFCDM_155 | 0.0 | 1.0 | 0.0 |
| COABFCDM_156 | 1.0 | 0.0 | 1.0 |
| COABFCDM_158 | 1.0 | 0.0 | 1.0 |
| COABFCDM_159 | 1.0 | 0.0 | 1.0 |
| COABFCDM_160 | 0.0 | 1.0 | 0.0 |
| COABFCDM_161 | 1.0 | 0.0 | 1.0 |
| COABFCDM_162 | 0.0 | 1.0 | 0.0 |
| COABFCDM_164 | 1.0 | 0.0 | 1.0 |
| COABFCDM_165 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COABFCDM_15 | 16602 | 43076 | False | Siphoviridae | VOG4552, VOG6242, VOG5447, VOG6780, VOG5361, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG4619, VOG0565, VOG4669, VOG0753, VOG0602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)