Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 4 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCAHCHCD_27 | 32932 | 33777 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| PCAHCHCD_16 | 23663 | 24433 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCAHCHCD_27 | 32932 | 33777 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| PCAHCHCD_16 | 23663 | 24433 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCAHCHCD_27 | 32932 | 33774 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| PCAHCHCD_16 | 26847 | 27749 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| PCAHCHCD_16 | 23663 | 24430 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PCAHCHCD_65 | 2550 | 3200 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCAHCHCD_87 | 32734 | 33876 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| PCAHCHCD_67 | 42488 | 42246 | SpoVG | 2.55e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PCAHCHCD_64 | 5480 | 5677 | CspA | 1.15e-31 | cold shock protein | 87.88 | 100.00 | CAA62903 |
| PCAHCHCD_50 | 25003 | 25191 | CspB | 5.90e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCAHCHCD_1 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_2 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_3 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_4 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_5 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_6 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_7 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_8 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_9 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_10 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_11 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_12 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_13 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_14 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_15 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_16 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_17 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_18 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_19 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_20 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_21 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_22 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_23 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_24 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_25 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_26 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_27 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_28 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_29 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_30 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_31 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_32 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_33 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_35 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_37 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_38 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_39 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_40 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_41 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_42 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_43 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_44 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_45 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_47 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_48 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_49 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_50 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_51 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_52 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_53 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_54 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_56 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_57 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_58 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_59 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_60 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_61 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_62 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_63 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_64 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_65 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_66 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_67 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_68 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_69 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_70 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_71 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_75 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_76 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_77 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_78 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_79 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_80 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_81 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_82 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_84 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_85 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_86 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_87 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_88 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_89 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_90 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_91 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_92 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_93 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_94 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_95 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_96 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_97 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_98 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_99 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_100 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_101 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_102 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_104 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_105 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_106 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_107 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_108 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_109 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_110 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_111 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_112 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_114 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_115 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_116 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_117 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_118 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_119 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_120 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_121 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_122 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_123 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_125 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_126 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_127 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_128 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_129 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_130 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_131 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_132 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_133 | 0.0 | 1.0 | 0.0 |
| PCAHCHCD_134 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_135 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_136 | 1.0 | 0.0 | 1.0 |
| PCAHCHCD_137 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCAHCHCD_54 | 13619 | 43185 | False | Myoviridae | VOG0226, VOG6324, VOG5617, VOG4552, VOG6242, VOG5447, VOG7761, VOG5616, VOG4571, VOG1328, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG4572, VOG5872, VOG4623, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)